ggKbase home page

SCNpilot_bf_inoc_scaffold_1316_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1316_curated_1
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

1..153
DNA (153bp) protein (51aa)
Rubredoxin n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1V8_CONWI
rubredoxin-type Fe(Cys)4 protein
Rubredoxin {ECO:0000256|RuleBase:RU003820}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1316_curated_2
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

180..782
DNA (603bp) protein (201aa)
Transcriptional regulator, TetR family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1V7_CONWI
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ADB54138.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1316_curated_3
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

779..1270
DNA (492bp) protein (164aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Phosphodiesterase, MJ0936 family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FDZ9_CONWI
phosphodiesterase, MJ0936 family; K07095
SCNpilot_bf_inoc_scaffold_1316_curated_4
Streptomyces sp. 150FB, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1311..1976)
DNA (666bp) protein (222aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CUI5_PSEUX
LuxR family transcriptional regulator {ECO:0000313|EMBL:KIF77121.1}; TaxID=1576605 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 150FB.;"
LuxR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_1316_curated_5
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1973..3211)
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI0003697846
Two-component system sensor histidine kinase {ECO:0000313|EMBL:CCH17003.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
histidine kinase
SCNpilot_bf_inoc_scaffold_1316_curated_6
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3355..4317
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Streptomycetaceae bacterium MP113-05 RepID=V6JQ76_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KDS86488.1}; TaxID=1906 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
hypothetical protein; K09687 antibiotic transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_1316_curated_7
Streptomycetaceae bacterium MP113-05, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4317..5084
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Streptomycetaceae bacterium MP113-05 RepID=V6JMZ4_9ACTO
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1380770 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae.;" source="Streptomycetaceae bacterium MP113-05.;"
ABC transporter; K09686 antibiotic transport system permease protein
SCNpilot_bf_inoc_scaffold_1316_curated_8
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(5212..6438)
DNA (1227bp) protein (409aa)
Peptidase S1 and S6 chymotrypsin/Hap n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FBT0_CONWI
peptidase S1 and S6 chymotrypsin/Hap
Peptidase S1 and S6 chymotrypsin/Hap {ECO:0000313|EMBL:ADB51345.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1316_curated_9
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6562..8067)
DNA (1506bp) protein (502aa)
Catalase {ECO:0000256|RuleBase:RU000498}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
Catalase n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LWQ6_ACIC1
SCNpilot_bf_inoc_scaffold_1316_curated_10
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(8448..9305)
DNA (858bp) protein (286aa)
Integral membrane protein n=1 Tax=Patulibacter medicamentivorans RepID=H0EBY2_9ACTN
Integral membrane protein {ECO:0000313|EMBL:EHN08823.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1316_curated_11
unknown

Not on your lists

comp(9314..9679)
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1316_curated_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(9683..10768)
DNA (1086bp) protein (362aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FA45_CONWI
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ADB53140.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1316_curated_13
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(11326..11529)
DNA (204bp) protein (68aa)
Cold-shock DNA-binding domain protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3K0_CONWI
cold-shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:ADB52365.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1316_curated_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(11775..12926)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FDM7_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB49601.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1316_curated_15
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

13119..14150
DNA (1032bp) protein (344aa)
Sodium/hydrogen exchanger n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FBG1_CONWI
sodium/hydrogen exchanger
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ADB49330.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1316_curated_16
unknown

Not on your lists

14147..14257
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1316_curated_17
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(14254..16110)
DNA (1857bp) protein (619aa)
sodium:proton antiporter n=1 Tax=Bacillus sp. L1(2012) RepID=UPI00034A06DB
Na+/H+ antiporter rbh
Tax=RBG_16_Actinobacteria_68_21_curated
SCNpilot_bf_inoc_scaffold_1316_curated_18
unknown

Not on your lists

comp(16110..16304)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1316_curated_19
unknown

Not on your lists

comp(16716..16898)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1316_curated_20
Streptomyces coelicolor, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17061..18704)
DNA (1644bp) protein (548aa)
Putative transport integral membrane protein n=1 Tax=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) RepID=Q93RS4_STRCO
SCIF3.22c; transport integral membrane protein; K03281 chloride channel protein, CIC family rbh
Putative transport integral membrane protein {ECO:0000313|EMBL:CAC37541.1}; TaxID=100226 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group.;" source="Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145).;"
SCNpilot_bf_inoc_scaffold_1316_curated_21
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18789..19505
DNA (717bp) protein (239aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1B2_CONWI
Uncharacterized protein {ECO:0000313|EMBL:KGH45234.1}; TaxID=1522368 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
Crp/Fnr family transcriptional regulator
SCNpilot_bf_inoc_scaffold_1316_curated_22
Streptomyces sp. 150FB, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19567..20790
DNA (1224bp) protein (408aa)
3-carboxymuconate cyclase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B7B157
Uncharacterized protein {ECO:0000313|EMBL:KIF75414.1}; TaxID=1576605 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 150FB.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1316_curated_23
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20916..21473
DNA (558bp) protein (186aa)
RNA polymerase sigma24 factor n=1 Tax=Frankia sp. BMG5.12 RepID=UPI0003704004
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=RBG_16_Deltaproteobacteria_71_12_curated
SCNpilot_bf_inoc_scaffold_1316_curated_24
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

21470..21730
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Frankia sp. BMG5.12 RepID=UPI000380ED50
putative transmembrane anti-sigma factor
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
SCNpilot_bf_inoc_scaffold_1316_curated_25
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

21979..22326
DNA (348bp) protein (116aa)
Polysaccharide deacetylase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWB8_RUBXD
polysaccharide deacetylase
Putative xylanase/chitin deacetylase {ECO:0000313|EMBL:AHY47348.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
SCNpilot_bf_inoc_scaffold_1316_curated_26
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

22323..23456
DNA (1134bp) protein (378aa)
Putative uncharacterized protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWB9_RUBXD
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AHY47347.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1316_curated_27
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

23453..24037
DNA (585bp) protein (195aa)
Methyltransferase type 12 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWC0_RUBXD
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ABG04308.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
SCNpilot_bf_inoc_scaffold_1316_curated_28
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

24037..25209
DNA (1173bp) protein (391aa)
NAD(P)H-nitrite reductase n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1HY52_9PSEU
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:AHY47345.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
NAD(P)H-nitrite reductase
SCNpilot_bf_inoc_scaffold_1316_curated_29
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

25200..26906
DNA (1707bp) protein (569aa)
family 2 glycosyl transferase; K13693 glucosyl-3-phosphoglycerate synthase [EC:2.4.1.-]
Glycosyl transferase family 2 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FFE5_CONWI
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADB53738.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_1316_curated_30
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26949..27677
DNA (729bp) protein (243aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IP22_ANADE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC80558.1}; TaxID=290397 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
Displaying items 1-30 of 33 in total

View Taxonomy