ggKbase home page

SCNpilot_bf_inoc_scaffold_2866_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_2866_curated_1
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

673..1614
DNA (942bp) protein (314aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
Glycerol-3-phosphate dehydrogenase n=1 Tax=Patulibacter medicamentivorans RepID=H0E5F3_9ACTN
glpA; glycerol-3-phosphate dehydrogenase
SCNpilot_bf_inoc_scaffold_2866_curated_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1627..2472
DNA (846bp) protein (282aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Ribonuclease E n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5W8_NOVAD
transcription termination factor Rho; K03628 transcription termination factor Rho
SCNpilot_bf_inoc_scaffold_2866_curated_3

Not on your lists

comp(2497..2964)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2E3_CONWI
Uncharacterized protein {ECO:0000313|EMBL:KKK89491.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_2866_curated_4
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3158..3454
DNA (297bp) protein (99aa)
Uncharacterized protein n=2 Tax=Thauera RepID=C4KA73_THASP
hypothetical protein; K09005 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR01299.1}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
SCNpilot_bf_inoc_scaffold_2866_curated_5
unknown

Not on your lists

comp(3507..4034)
DNA (528bp) protein (176aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_2866_curated_6
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

4140..4856
DNA (717bp) protein (239aa)
Phosphate regulon transcriptional regulatory protein PhoB (SphR) n=1 Tax=Patulibacter medicamentivorans RepID=H0EBZ5_9ACTN
Phosphate regulon transcriptional regulatory protein PhoB (SphR) {ECO:0000313|EMBL:EHN08799.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
two component transcriptional regulator
SCNpilot_bf_inoc_scaffold_2866_curated_7
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(4920..5510)
DNA (591bp) protein (197aa)
Transcriptional regulator, ArsR family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1A8_CONWI
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ADB52071.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_2866_curated_8
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5740..6720
DNA (981bp) protein (327aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
ATPase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QPR8_9BURK
sensor kinase
SCNpilot_bf_inoc_scaffold_2866_curated_9
Dietzia sp. UCD-THP, Dietzia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7325..8356
DNA (1032bp) protein (344aa)
CpaF pilus assembly protein, ATPase CpaF n=1 Tax=Dietzia sp. UCD-THP RepID=UPI00036A9D53
Pilus assembly protein CpaF {ECO:0000313|EMBL:EYT57654.1}; TaxID=1292020 species="Bacteria; Actinobacteria; Corynebacteriales; Dietziaceae; Dietzia.;" source="Dietzia sp. UCD-THP.;"
type II secretion system protein E; K02283 pilus assembly protein CpaF
SCNpilot_bf_inoc_scaffold_2866_curated_10
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

8353..9258
DNA (906bp) protein (302aa)
Type II secretion system F domain protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2D2_CONWI
type II secretion system F domain protein; K12510 tight adherence protein B
Type II secretion system F domain protein {ECO:0000313|EMBL:ADB52198.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_2866_curated_11
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

9255..10166
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Patulibacter americanus RepID=UPI0003B5E865
type II secretion system F domain protein; K12511 tight adherence protein C
Type II secretion system F domain protein {ECO:0000313|EMBL:ADB52197.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_2866_curated_12
unknown

Not on your lists

comp(10205..11104)
DNA (900bp) protein (300aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_2866_curated_13
unknown

Not on your lists

comp(11160..12041)
DNA (882bp) protein (294aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_2866_curated_14
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

12250..12690
DNA (441bp) protein (147aa)
Protein MraZ n=1 Tax=Firmicutes bacterium CAG:582 RepID=R6GTN1_9FIRM
cell division protein MraZ; K03925 MraZ protein
Tax=RBG_13_Chloroflexi_68_17_curated
SCNpilot_bf_inoc_scaffold_2866_curated_15
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

12693..13730
DNA (1038bp) protein (346aa)
S-adenosyl-methyltransferase MraW; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2C8_CONWI
SCNpilot_bf_inoc_scaffold_2866_curated_16
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13730..14695
DNA (966bp) protein (322aa)
transcriptional regulator n=1 Tax=Mycobacterium sp. 360MFTsu5.1 RepID=UPI0003721049
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU47663.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_bf_inoc_scaffold_2866_curated_17
unknown

Not on your lists

comp(14817..15590)
DNA (774bp) protein (258aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_2866_curated_18
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

15771..16283
DNA (513bp) protein (171aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129]
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:ADB52192.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ADB52192.1};; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Peptidoglycan glycosyltransferase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2C6_CONWI
SCNpilot_bf_inoc_scaffold_2866_curated_19
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

16323..17813
DNA (1491bp) protein (497aa)
UDP-N-acetylmuramyl tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208};
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2C5_CONWI
SCNpilot_bf_inoc_scaffold_2866_curated_20
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

17810..19234
DNA (1425bp) protein (475aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Patulibacter medicamentivorans RepID=H0E558_9ACTN
SCNpilot_bf_inoc_scaffold_2866_curated_21
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

19236..20210
DNA (975bp) protein (325aa)
phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13); K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2C4_CONWI
SCNpilot_bf_inoc_scaffold_2866_curated_22
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

20445..21848
DNA (1404bp) protein (468aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2C3_CONWI
SCNpilot_bf_inoc_scaffold_2866_curated_23
unknown

Not on your lists

comp(22054..22272)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_2866_curated_24
unknown

Not on your lists

comp(22288..22476)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_2866_curated_25
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

22608..23162
DNA (555bp) protein (185aa)
Cell division protein FtsW n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2C2_CONWI
cell division protein FtsW; K03588 cell division protein FtsW
Cell division protein FtsW {ECO:0000313|EMBL:ADB52188.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_2866_curated_26
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

23137..24162
DNA (1026bp) protein (342aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227); K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Co
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase n=1 Tax=Patulibacter americanus RepID=UPI0003B79C0F
SCNpilot_bf_inoc_scaffold_2866_curated_27
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

24198..25664
DNA (1467bp) protein (489aa)
UDP-N-acetylmuramate--L-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1L3_CONWI
SCNpilot_bf_inoc_scaffold_2866_curated_28
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

25661..26617
DNA (957bp) protein (319aa)
UDP-N-acetylenolpyruvoylglucosamine reductase; K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158]
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HU15_9BACL
Tax=RBG_16_Actinobacteria_67_10_curated
SCNpilot_bf_inoc_scaffold_2866_curated_29
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

26649..27203
DNA (555bp) protein (185aa)
Cell division septal protein-like protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1L2_CONWI
cell division septal protein-like protein; K03589 cell division protein FtsQ
Cell division septal protein-like protein {ECO:0000313|EMBL:ADB52175.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_bf_inoc_scaffold_2866_curated_30
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

27538..28617
DNA (1080bp) protein (360aa)
Cell division protein FtsZ n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1L1_CONWI
cell division protein FtsZ; K03531 cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Displaying items 1-30 of 32 in total

View Taxonomy