ggKbase home page

SCNpilot_bf_inoc_scaffold_2358_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_2358_curated_1
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..461)
DNA (459bp) protein (153aa)
Transcriptional regulator, GntR family n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AUW6_RUBXD
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABG04812.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
SCNpilot_bf_inoc_scaffold_2358_curated_2
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(474..2012)
DNA (1539bp) protein (513aa)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:AEA26325.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AEA26325.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Monosaccharide-transporting ATPase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CTA7_PSEUX
monosaccharide-transporting ATPase
SCNpilot_bf_inoc_scaffold_2358_curated_3
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2017..3255)
DNA (1239bp) protein (413aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Curtobacterium sp. B8 RepID=UPI00034A6ED8
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:EYT60986.1}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
sugar ABC transporter substrate-binding protein; K10439 ribose transport system substrate-binding protein
SCNpilot_bf_inoc_scaffold_2358_curated_4
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3255..4361)
DNA (1107bp) protein (369aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CTA6_PSEUX
ABC transporter permease; K10440 ribose transport system permease protein
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEA26324.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_bf_inoc_scaffold_2358_curated_5
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4981..6168)
DNA (1188bp) protein (396aa)
thiolase (EC:2.3.1.16); K00632 acetyl-CoA acyltransferase [EC:2.3.1.16]
Thiolase {ECO:0000313|EMBL:AAZ54913.1}; EC=2.3.1.16 {ECO:0000313|EMBL:AAZ54913.1};; TaxID=269800 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (strain YX).;"
acetyl-CoA acetyltransferase n=1 Tax=Actinopolyspora halophila RepID=UPI0003665FB4
SCNpilot_bf_inoc_scaffold_2358_curated_6
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(6165..6914)
DNA (750bp) protein (250aa)
3-oxoadipate CoA-transferase subunit B {ECO:0000313|EMBL:EHN10252.1}; EC=2.8.3.6 {ECO:0000313|EMBL:EHN10252.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
catJ; 3-oxoadipate:succinyl-CoA transferase subunit B (EC:2.8.3.6); K01040 glutaconate CoA-transferase, subunit B [EC:2.8.3.12]
3-oxoadipate CoA-transferase subunit B n=1 Tax=Patulibacter medicamentivorans RepID=H0E7W2_9ACTN
SCNpilot_bf_inoc_scaffold_2358_curated_7
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6911..7747)
DNA (837bp) protein (279aa)
3-oxoadipate CoA-transferase (EC:2.8.3.6); K01039 glutaconate CoA-transferase, subunit A [EC:2.8.3.12]
3-oxoadipate CoA-transferase {ECO:0000313|EMBL:ACZ90584.1}; EC=2.8.3.6 {ECO:0000313|EMBL:ACZ90584.1};; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
3-oxoadipate CoA-transferase n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AUC9_STRRD
SCNpilot_bf_inoc_scaffold_2358_curated_8
Streptomyces sp. 769, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7740..8111)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI0003718917
Uncharacterized protein {ECO:0000313|EMBL:AJC60972.1}; TaxID=1262452 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 769.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_2358_curated_9
Streptomyces violaceusniger, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8114..8311)
DNA (198bp) protein (66aa)
short-chain dehydrogenase n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI00037F05A3
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEM83005.1}; TaxID=653045 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces violaceusniger Tu 4113.;"
SCNpilot_bf_inoc_scaffold_2358_curated_10
unknown

Not on your lists

comp(8909..9637)
DNA (729bp) protein (243aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_2358_curated_11
unknown

Not on your lists

10173..11177
DNA (1005bp) protein (335aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_2358_curated_12
Rhodococcus sp. BCP1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11242..11649)
DNA (408bp) protein (136aa)
N-methylhydantoinase A n=1 Tax=Rhodococcus sp. EsD8 RepID=N1MB72_9NOCA
5-oxoprolinase {ECO:0000313|EMBL:KDE14437.1}; TaxID=931223 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. BCP1.;"
N-methylhydantoinase A/acetone carboxylase, beta subunit
SCNpilot_bf_inoc_scaffold_2358_curated_13
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(11969..13168)
DNA (1200bp) protein (400aa)
N-methylhydantoinase A {ECO:0000313|EMBL:EHN12950.1}; EC=3.5.2.14 {ECO:0000313|EMBL:EHN12950.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
5-oxoprolinase; K01473 N-methylhydantoinase A [EC:3.5.2.14]
N-methylhydantoinase A n=1 Tax=Patulibacter medicamentivorans RepID=H0DZZ1_9ACTN
SCNpilot_bf_inoc_scaffold_2358_curated_14
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(13165..14949)
DNA (1785bp) protein (595aa)
N-methylhydantoinase B {ECO:0000313|EMBL:EHN12951.1}; EC=3.5.2.14 {ECO:0000313|EMBL:EHN12951.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
N-methylhydantoinase B n=1 Tax=Patulibacter medicamentivorans RepID=H0DZZ2_9ACTN
5-oxoprolinase
SCNpilot_bf_inoc_scaffold_2358_curated_15
Rhodococcus sp. BCP1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14957..16216)
DNA (1260bp) protein (420aa)
Aminopeptidase YpdF (MP-, MA-,MS-,AP-,NP-specific) n=1 Tax=Rhodococcus sp. EsD8 RepID=N1MAU9_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:KDE14435.1}; TaxID=931223 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. BCP1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_2358_curated_16
unknown

Not on your lists

16808..16933
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_2358_curated_17
Leisingera sp. ANG-Vp, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17356..18510)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000365187D
Uncharacterized protein {ECO:0000313|EMBL:KIC20700.1}; TaxID=1577896 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-Vp.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_2358_curated_18
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

18915..19676
DNA (762bp) protein (254aa)
Transcriptional regulator GntR family n=1 Tax=Patulibacter medicamentivorans RepID=H0E0Q7_9ACTN
Transcriptional regulator GntR family {ECO:0000313|EMBL:EHN12791.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
transcriptional regulator
Displaying 18 items

View Taxonomy