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SCNpilot_bf_inoc_scaffold_59_curated

Search features with annotation key words

Displaying items 61-90 of 300 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_59_curated_61
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79535..80113
DNA (579bp) protein (193aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=56459 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola.;"
ribosomal large subunit pseudouridine synthase E n=1 Tax=Xanthomonas vasicola RepID=UPI0001CBFFB1
ribosomal large subunit pseudouridine synthase e protein
SCNpilot_bf_inoc_scaffold_59_curated_62
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80110..80883
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3DF40
SAM-dependent methyltransferase {ECO:0000313|EMBL:KGI79047.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
methylase
SCNpilot_bf_inoc_scaffold_59_curated_63
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80887..81678)
DNA (792bp) protein (264aa)
Mg-dependent DNase (EC:3.1.21.-)
Mg-dependent DNase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7P4_9GAMM
Preprotein translocase subunit TatD {ECO:0000313|EMBL:GAN45603.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_bf_inoc_scaffold_59_curated_64
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

81724..84399
DNA (2676bp) protein (892aa)
hrpB; ATP-dependent RNA helicase (EC:3.6.1.-); K03579 ATP-dependent helicase HrpB [EC:3.6.4.13]
ATP-dependent RNA helicase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VW24_9GAMM
ATP-dependent RNA helicase {ECO:0000313|EMBL:EIL91415.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_bf_inoc_scaffold_59_curated_65
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84404..85123)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Plesiomonas shigelloides 302-73 RepID=R8APT7_PLESH
Uncharacterized protein {ECO:0000313|EMBL:KGI78923.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein; K09797 hypothetical protein
SCNpilot_bf_inoc_scaffold_59_curated_66
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85120..86625)
DNA (1506bp) protein (502aa)
Putative aminopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NM89_9GAMM
Peptidase M28 {ECO:0000313|EMBL:GAN45600.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative aminopeptidase
SCNpilot_bf_inoc_scaffold_59_curated_67
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86693..88267)
DNA (1575bp) protein (525aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037409AA
Uncharacterized protein {ECO:0000313|EMBL:GAN45962.1}; Flags: Fragment;; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
SCNpilot_bf_inoc_scaffold_59_curated_68
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88538..89119)
DNA (582bp) protein (194aa)
Bacterioferritin (Cytochrome b1) n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDU8_9GAMM
Bacterioferritin {ECO:0000313|EMBL:AHX15696.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
bacterioferritin (cytochrome b1)
SCNpilot_bf_inoc_scaffold_59_curated_69
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89210..91069)
DNA (1860bp) protein (620aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003649A2B
Uncharacterized protein {ECO:0000313|EMBL:KFN41851.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_59_curated_70
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91102..92979)
DNA (1878bp) protein (626aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Phosphomethylpyrimidine synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDG7_9GAMM
thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC
SCNpilot_bf_inoc_scaffold_59_curated_71
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93326..93967)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000374E972
Uncharacterized protein {ECO:0000313|EMBL:KFN45230.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
TetR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_59_curated_72

Not on your lists

94332..94997
DNA (666bp) protein (222aa)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:EQD41331.1}; EC=2.1.1.77 {ECO:0000313|EMBL:EQD41331.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
protein-L-isoaspartate carboxylmethyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate(D-aspartate) O-methyltransferase n=2 Tax=mine drainage metagenome RepID=T0Z046_9ZZZZ
SCNpilot_bf_inoc_scaffold_59_curated_73
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

95051..96484
DNA (1434bp) protein (478aa)
Type I secretion outer membrane protein, TolC family n=1 Tax=mine drainage metagenome RepID=T1BM54_9ZZZZ
Type I secretion protein TolC {ECO:0000313|EMBL:GAN45914.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
type I secretion outer membrane protein, TolC family
SCNpilot_bf_inoc_scaffold_59_curated_74
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96520..97854)
DNA (1335bp) protein (445aa)
3-deoxy-D-manno-octulosonic acid transferase n=1 Tax=Dyella japonica RepID=UPI00031F49B3
3-deoxy-D-manno-octulosonic acid transferase {ECO:0000313|EMBL:AIF45782.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
3-deoxy-D-manno-octulosonic-acid transferase
SCNpilot_bf_inoc_scaffold_59_curated_75
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(98080..99108)
DNA (1029bp) protein (343aa)
Putative permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8R1_9GAMM
Putative permease {ECO:0000313|EMBL:EIL95852.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative permease
SCNpilot_bf_inoc_scaffold_59_curated_76
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99201..99908
DNA (708bp) protein (236aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Orotidine 5'-phosphate decarboxylase n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2U8F9_XANAP
SCNpilot_bf_inoc_scaffold_59_curated_77
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99955..100977
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VR09_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89650.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_59_curated_78
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

101116..103644
DNA (2529bp) protein (843aa)
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00393}; Short=GPAT {ECO:0000256|HAMAP-Rule:MF_00393};; EC=2.3.1.15 {ECO:0000256|HAMAP-Rule:MF_00393};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
glycerol-3-phosphate acyltransferase (EC:2.3.1.15)
glycerol-3-phosphate acyltransferase n=1 Tax=Dyella japonica RepID=UPI0002ECB4CE
SCNpilot_bf_inoc_scaffold_59_curated_79
unknown

Not on your lists

comp(103658..104086)
DNA (429bp) protein (143aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_59_curated_80
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(104157..105560)
DNA (1404bp) protein (468aa)
Lipopolysaccharide synthesis sugar transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRS7_9GAMM
Lipopolysaccharide synthesis sugar transferase {ECO:0000313|EMBL:EIM02169.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
SCNpilot_bf_inoc_scaffold_59_curated_81
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

105780..107612
DNA (1833bp) protein (611aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fruct
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJJ9_9GAMM
glucosamine--fructose-6-phosphate aminotransferase, isomerizing
SCNpilot_bf_inoc_scaffold_59_curated_82
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(107667..109379)
DNA (1713bp) protein (571aa)
ABC transporter ATP-binding protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZK8_9GAMM
ABC-type multidrug transport system, ATPase and permease component
ABC-type multidrug transport system, ATPase and permease component {ECO:0000313|EMBL:AGG87846.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_59_curated_83
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(109459..110628)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCW9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97310.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
serine kinase of the HPr protein, regulates carbohydrate metabolism
SCNpilot_bf_inoc_scaffold_59_curated_84
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

110710..112221
DNA (1512bp) protein (504aa)
Mg-protoporphyrin IX monomethyl ester oxidative cyclase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCW8_9GAMM
Mg-protoporphyrin IX monomethyl ester oxidative cyclase {ECO:0000313|EMBL:EIL97309.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Fe-S oxidoreductase
SCNpilot_bf_inoc_scaffold_59_curated_85
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

112178..113476
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCW7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97308.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_59_curated_86
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

113473..114435
DNA (963bp) protein (321aa)
Glycosyl transferase family 2 n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MF25_RHOM4
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACY47475.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
SCNpilot_bf_inoc_scaffold_59_curated_87
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(114432..115508)
DNA (1077bp) protein (359aa)
Radical SAM domain protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6S9R0_9FLAO
radical SAM protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_bf_inoc_scaffold_59_curated_88
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

comp(115649..117718)
DNA (2070bp) protein (690aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WSN4_9GAMM
hypothetical protein
Tax=RBG_13_Aminicenantes_62_12_curated
SCNpilot_bf_inoc_scaffold_59_curated_89
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(117780..120941)
DNA (3162bp) protein (1054aa)
Glycosyl transferase family 2 n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9H3G6_GLUDA
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACI52729.1}; Putative glycosyl transferase {ECO:0000313|EMBL:CAP57314.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_bf_inoc_scaffold_59_curated_90
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(120938..122356)
DNA (1419bp) protein (473aa)
ABC transporter-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WSP1_9GAMM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHF08077.1}; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium metallireducens DSM 15288.;"
ABC transporter; K09691 lipopolysaccharide transport system ATP-binding protein
Displaying items 61-90 of 300 in total

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