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SCNpilot_bf_inoc_scaffold_1975_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1975_curated_1
Edwardsiella tarda, Edwardsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..117
DNA (117bp) protein (39aa)
Elongation factor Tu n=6 Tax=Edwardsiella RepID=C5BGM7_EDWI9
elongation factor Tu; K02358 elongation factor Tu
Elongation factor Tu C-terminal domain protein {ECO:0000313|EMBL:EFE24915.1}; Flags: Fragment;; TaxID=500638 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella.;" source="Edwardsiella tarda ATCC 23685.;"
SCNpilot_bf_inoc_scaffold_1975_curated_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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342..773
DNA (432bp) protein (144aa)
Protein translocase subunit SecE n=2 Tax=Rhodanobacter RepID=I4WGB0_9GAMM
preprotein translocase, SecE subunit
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_1975_curated_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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777..1349
DNA (573bp) protein (191aa)
Transcription termination/antitermination protein NusG n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8S9_9GAMM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcription termination/antitermination factor NusG; K02601 transcriptional antiterminator NusG
SCNpilot_bf_inoc_scaffold_1975_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1514..1945
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=2 Tax=Rhodanobacter RepID=I4WGB2_9GAMM
LSU ribosomal protein L11P
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_1975_curated_5

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1947..2654
DNA (708bp) protein (236aa)
50s ribosomal protein l1 n=1 Tax=mine drainage metagenome RepID=T0ZAT5_9ZZZZ
50s ribosomal protein l1 {ECO:0000313|EMBL:EQD42178.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribosomal protein L1
SCNpilot_bf_inoc_scaffold_1975_curated_6

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3065..3589
DNA (525bp) protein (175aa)
50s ribosomal protein l10 n=1 Tax=mine drainage metagenome RepID=T0ZN36_9ZZZZ
50s ribosomal protein l10 {ECO:0000313|EMBL:EQD45892.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_bf_inoc_scaffold_1975_curated_7
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3712..4089
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVH8_PSEUU
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_bf_inoc_scaffold_1975_curated_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4470..8624
DNA (4155bp) protein (1385aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Dyella ginsengisoli RepID=UPI0003462B2D
SCNpilot_bf_inoc_scaffold_1975_curated_9
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8770..12987
DNA (4218bp) protein (1406aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
DNA-directed RNA polymerase subunit beta''; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Dyella ginsengisoli RepID=UPI0003455CD3
SCNpilot_bf_inoc_scaffold_1975_curated_10

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13198..13572
DNA (375bp) protein (125aa)
Ribosomal protein S12, bacterial-type n=1 Tax=mine drainage metagenome RepID=T1AXQ2_9ZZZZ
Ribosomal protein S12, bacterial-type {ECO:0000313|EMBL:EQD65416.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
SCNpilot_bf_inoc_scaffold_1975_curated_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13583..14050
DNA (468bp) protein (156aa)
30S ribosomal protein S7 n=1 Tax=Dyella ginsengisoli RepID=UPI000344DE54
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SSU ribosomal protein S7P
SCNpilot_bf_inoc_scaffold_1975_curated_12
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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14135..16225
DNA (2091bp) protein (697aa)
Translation elongation factor 2 (EF-2/EF-G) n=5 Tax=mine drainage metagenome RepID=T1CGF9_9ZZZZ
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054, ECO:0000313|EMBL:KIJ72065.1}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
fusA; elongation factor g protein; K02355 elongation factor G
Displaying 12 items

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