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SCNpilot_bf_inoc_scaffold_32_curated

Search features with annotation key words

Displaying items 301-330 of 352 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_32_curated_301
unknown

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367456..368025
DNA (570bp) protein (190aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_32_curated_302
unknown

Not on your lists

368036..368569
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_32_curated_303
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(368633..371170)
DNA (2538bp) protein (846aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00037C520F
hypothetical protein
Tax=BJP_08E140C01_Clostridiales_46_19
SCNpilot_bf_inoc_scaffold_32_curated_304

Not on your lists

comp(371413..373422)
DNA (2010bp) protein (670aa)
Marine sediment metagenome DNA, contig: S01H4_L06313 {ECO:0000313|EMBL:GAG76591.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_bf_inoc_scaffold_32_curated_305
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(373835..375775)
DNA (1941bp) protein (647aa)
transcriptional regulator n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003703AF8
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Serine/threonine protein kinase {ECO:0000313|EMBL:EIL94321.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_bf_inoc_scaffold_32_curated_306
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(376486..377109)
DNA (624bp) protein (208aa)
CDP-alcohol phosphatidyltransferase; K00998 phosphatidylserine synthase [EC:2.7.8.8]
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00037A6E8B
Variovorax paradoxus strain MEDvA23 contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32058.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_bf_inoc_scaffold_32_curated_307
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(377203..377841)
DNA (639bp) protein (213aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN41476.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
Hypothetical uncharacterized membrane protein id=2489077 bin=GWF1_Xanthomonadales_69_6 species=Xanthomonas albilineans genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
rhomboid family protein
SCNpilot_bf_inoc_scaffold_32_curated_308
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(378120..378758)
DNA (639bp) protein (213aa)
membrane protein n=1 Tax=Dyella japonica RepID=UPI0002ED8848
Membrane protein {ECO:0000313|EMBL:AHX12381.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_32_curated_309
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

378836..379447
DNA (612bp) protein (204aa)
Putative proline hydroxylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCS2_9GAMM
putative proline hydroxylase
Putative proline hydroxylase {ECO:0000313|EMBL:AGG87228.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_32_curated_310
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(379761..380834)
DNA (1074bp) protein (358aa)
extracellular protease (EC:3.4.24.-)
Extracellular protease {ECO:0000313|EMBL:AEK63262.1}; EC=3.4.24.- {ECO:0000313|EMBL:AEK63262.1};; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
Extracellular protease n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AD78_COLFT
SCNpilot_bf_inoc_scaffold_32_curated_311
Serratia odorifera, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

381164..381865
DNA (702bp) protein (234aa)
Aquaporin Z n=1 Tax=Serratia odorifera DSM 4582 RepID=D4DWH0_SEROD
Aquaporin Z {ECO:0000256|HAMAP-Rule:MF_01146}; TaxID=667129 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia odorifera DSM 4582.;"
aqpZ; aquaporin Z; K06188 aquaporin Z rbh
SCNpilot_bf_inoc_scaffold_32_curated_312
Aliiglaciecola lipolytica, Aliiglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

382027..382689
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Glaciecola lipolytica E3 RepID=K6YEU1_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:GAC16687.1}; TaxID=1127673 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Aliiglaciecola.;" source="Aliiglaciecola lipolytica E3.;"
RNA polymerase sigma factor, sigma-70 family; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_bf_inoc_scaffold_32_curated_313
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(383330..384316)
DNA (987bp) protein (329aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
malate dehydrogenase n=1 Tax=Dyella ginsengisoli RepID=UPI000348B604
malate dehydrogenase
SCNpilot_bf_inoc_scaffold_32_curated_314
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(384389..384757)
DNA (369bp) protein (123aa)
Glutaredoxin n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVD9_PSEUU
glutaredoxin
Glutaredoxin {ECO:0000313|EMBL:ADV28138.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_bf_inoc_scaffold_32_curated_315
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(384765..385961)
DNA (1197bp) protein (399aa)
aminotransferase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B54739
Aminotransferase {ECO:0000313|EMBL:KFN44298.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
aspartate/tyrosine/aromatic aminotransferase
SCNpilot_bf_inoc_scaffold_32_curated_316
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

386107..386373
DNA (267bp) protein (89aa)
Transglycosylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW56_9GAMM
Transglycosylase {ECO:0000313|EMBL:KGI77371.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_32_curated_317
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(386491..387018)
DNA (528bp) protein (176aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
Peptidyl-prolyl cis-trans isomerase id=2728015 bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
SCNpilot_bf_inoc_scaffold_32_curated_318
Kangiella geojedonensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

387555..389753
DNA (2199bp) protein (733aa)
Uncharacterized protein n=1 Tax=Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) RepID=C7RD59_KANKD
Uncharacterized protein {ECO:0000313|EMBL:AKE51647.1}; TaxID=914150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella geojedonensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_32_curated_319
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

390248..392077
DNA (1830bp) protein (610aa)
GTP-binding protein TypA {ECO:0000313|EMBL:KGI77378.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
GTP-binding elongation factor protein id=2728009 bin=GWF1_Xanthomonadales_69_6 species=Xylella fastidiosa genus=Xylella taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
typA; GTP-binding elongation factor protein; K06207 GTP-binding protein rbh
SCNpilot_bf_inoc_scaffold_32_curated_320
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

392150..393001
DNA (852bp) protein (284aa)
Methyltransferase domain {ECO:0000313|EMBL:KJE23114.1}; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
Methyltransferase family protein id=2283295 bin=GWB2_Chloroflexi_54_36 species=Frankia sp. QA3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
methyltransferase type 11
SCNpilot_bf_inoc_scaffold_32_curated_321
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(393264..394544)
DNA (1281bp) protein (427aa)
Amidohydrolase n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QHQ7_9CYAN
nagA; amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AGY58398.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
SCNpilot_bf_inoc_scaffold_32_curated_322
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(394544..397690)
DNA (3147bp) protein (1049aa)
Amidohydrolase n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QHF5_9CYAN
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AGY58397.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
SCNpilot_bf_inoc_scaffold_32_curated_323
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(398034..399434)
DNA (1401bp) protein (467aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Dyella ginsengisoli RepID=UPI0003449E0F
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:KGQ19475.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
SCNpilot_bf_inoc_scaffold_32_curated_324
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(399526..400053)
DNA (528bp) protein (176aa)
Disulfide bond formation protein B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL43_9GAMM
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
disulfide bond formation protein DsbB
SCNpilot_bf_inoc_scaffold_32_curated_325
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(400265..400648)
DNA (384bp) protein (128aa)
50S ribosomal protein L17 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNL3_9GAMM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SCNpilot_bf_inoc_scaffold_32_curated_326
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(400680..401675)
DNA (996bp) protein (332aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Rudaea cellulosilytica RepID=UPI0003710C20
SCNpilot_bf_inoc_scaffold_32_curated_327
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(401694..402320)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B75DD4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
SCNpilot_bf_inoc_scaffold_32_curated_328
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(402332..402724)
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=4 Tax=Xanthomonas RepID=D2UBJ4_XANAP
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_bf_inoc_scaffold_32_curated_329
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(402743..403099)
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL48_9GAMM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
30S ribosomal protein S13
SCNpilot_bf_inoc_scaffold_32_curated_330
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(403237..404547)
DNA (1311bp) protein (437aa)
preprotein translocase subunit SecY n=1 Tax=Dyella japonica RepID=UPI00031E446A
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
preprotein translocase, SecY subunit
Displaying items 301-330 of 352 in total

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