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SCNpilot_bf_inoc_scaffold_32_curated

Search features with annotation key words

Displaying items 91-120 of 352 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_32_curated_91
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115094..115555
DNA (462bp) protein (154aa)
cytochrome C biogenesis protein CcmC n=1 Tax=Dyella ginsengisoli RepID=UPI00034C6463
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
cytochrome c-type biogenesis protein CcmE
SCNpilot_bf_inoc_scaffold_32_curated_92
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116280..118277
DNA (1998bp) protein (666aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037BC20F
Cytochrome C biogenesis protein {ECO:0000313|EMBL:AIF47679.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
c-type cytochrome biogenesis protein CcmF
SCNpilot_bf_inoc_scaffold_32_curated_93
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

118274..118831
DNA (558bp) protein (186aa)
C-type cytochromebiogenesis protein-thioredoxin n=1 Tax=Xanthomonas oryzae pv. oryzicola BLS256 RepID=G7TJC9_9XANT
C-type cytochromebiogenesis protein-thioredoxin; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
Thiol:disulfide interchange protein {ECO:0000313|EMBL:AHX12712.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_bf_inoc_scaffold_32_curated_94
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

118828..119277
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BIJ5_9XANT
Uncharacterized protein {ECO:0000313|EMBL:KFN48430.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
C-type cytochrome biogenesis protein; K02200 cytochrome c-type biogenesis protein CcmH
SCNpilot_bf_inoc_scaffold_32_curated_95
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

119274..120533
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037121F3
Cytochrome c heme lyase subunit CcmH {ECO:0000313|EMBL:EXJ16586.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
cytochrome c-type biogenesis protein CcmI
SCNpilot_bf_inoc_scaffold_32_curated_96
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(120581..121219)
DNA (639bp) protein (213aa)
LuxR family transcriptional regulator n=1 Tax=Xanthomonas sacchari RepID=UPI000262AE84
LuxR family transcriptional regulator {ECO:0000313|EMBL:AJC47486.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
SCNpilot_bf_inoc_scaffold_32_curated_97
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(121216..121989)
DNA (774bp) protein (258aa)
histidine kinase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000381ABDB
Histidine kinase {ECO:0000313|EMBL:EYR70354.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
histidine kinase
SCNpilot_bf_inoc_scaffold_32_curated_98
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(121979..125323)
DNA (3345bp) protein (1115aa)
Serine/threonine protein kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN58_9GAMM
Serine/threonine protein kinase {ECO:0000313|EMBL:EIM00900.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
protein kinase family protein
SCNpilot_bf_inoc_scaffold_32_curated_99
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125357..126250)
DNA (894bp) protein (298aa)
FHA domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHS0_9GAMM
FHA domain-containing protein {ECO:0000313|EMBL:KGQ18583.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
FHA domain-containing protein
SCNpilot_bf_inoc_scaffold_32_curated_100
Pseudoalteromonas sp. NW 4327, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(126266..127174)
DNA (909bp) protein (303aa)
UPI0003D61E86 related cluster n=1 Tax=unknown RepID=UPI0003D61E86
Uncharacterized protein {ECO:0000313|EMBL:ETJ48547.1}; TaxID=998520 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas sp. NW 4327.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_32_curated_101
Alcanivorax sp. PN-3, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127330..128022)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00036E25EF
S-adenosylmethionine-dependent methyltransferase {ECO:0000313|EMBL:ERS11769.1}; TaxID=1397526 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. PN-3.;"
putative S-adenosylmethionine-dependent methyltransferase
SCNpilot_bf_inoc_scaffold_32_curated_102
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

128065..129216
DNA (1152bp) protein (384aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
homoserine O-acetyltransferase (EC:2.3.1.31)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00038217F9
SCNpilot_bf_inoc_scaffold_32_curated_103
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

129248..129826
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003785F31
Cysteine dioxygenase {ECO:0000313|EMBL:KGI77554.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
putative metal-dependent enzyme of the double-stranded beta helix superfamily
SCNpilot_bf_inoc_scaffold_32_curated_104
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130495..132204
DNA (1710bp) protein (570aa)
hypothetical protein, partial n=1 Tax=Dyella ginsengisoli RepID=UPI000371B536
Peptidase {ECO:0000313|EMBL:EIL99815.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_32_curated_105
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(132313..133302)
DNA (990bp) protein (330aa)
Tax=RBG_13_Deltaproteobacteria_65_10_curated
SCNpilot_bf_inoc_scaffold_32_curated_106
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(133350..134324)
DNA (975bp) protein (325aa)
Tax=RBG_13_Deltaproteobacteria_65_10_curated
SCNpilot_bf_inoc_scaffold_32_curated_107
unknown

Not on your lists

134974..135147
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_32_curated_108
unknown

Not on your lists

135427..135711
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_32_curated_109
unknown

Not on your lists

135708..136061
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_32_curated_110
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(136202..138463)
DNA (2262bp) protein (754aa)
Transcriptional regulatory protein-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIZ5_KORVE
transcriptional regulatory protein-like
Transcriptional regulatory protein-like protein {ECO:0000313|EMBL:ABF43155.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
SCNpilot_bf_inoc_scaffold_32_curated_111
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138637..139599)
DNA (963bp) protein (321aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
prolyl aminopeptidase (EC:3.4.11.5)
proline iminopeptidase n=1 Tax=Dyella ginsengisoli RepID=UPI00034CA3B0
SCNpilot_bf_inoc_scaffold_32_curated_112
unknown

Not on your lists

comp(139660..140301)
DNA (642bp) protein (214aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_32_curated_113
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140298..141242)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037719B3
Uncharacterized protein {ECO:0000313|EMBL:EYR65814.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
bacterial regulatory helix-turn-helix s, AraC family protein
SCNpilot_bf_inoc_scaffold_32_curated_114
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142556..142912)
DNA (357bp) protein (119aa)
MerR family transcriptional regulator n=1 Tax=Rudaea cellulosilytica RepID=UPI00036731E9
Putative transcriptional regulator {ECO:0000313|EMBL:EIL96015.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative transcriptional regulator
SCNpilot_bf_inoc_scaffold_32_curated_115
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142887..143192)
DNA (306bp) protein (102aa)
Integration host factor subunit alpha n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXB8_9GAMM
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha
SCNpilot_bf_inoc_scaffold_32_curated_116
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(143194..145566)
DNA (2373bp) protein (791aa)
phenylalanyl-tRNA synthetase, beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003693E00
SCNpilot_bf_inoc_scaffold_32_curated_117
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(145607..146602)
DNA (996bp) protein (332aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
phenylalanyl-tRNA synthetase n=1 Tax=Dyella ginsengisoli RepID=UPI00034693ED
SCNpilot_bf_inoc_scaffold_32_curated_118
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(146814..147173)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Rudaea cellulosilytica RepID=UPI000375EEA3
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
LSU ribosomal protein L20P
SCNpilot_bf_inoc_scaffold_32_curated_119
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(147189..147386)
DNA (198bp) protein (66aa)
Ribosomal protein L35 n=1 Tax=mine drainage metagenome RepID=T1A7E8_9ZZZZ
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
SCNpilot_bf_inoc_scaffold_32_curated_120
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(147549..148013)
DNA (465bp) protein (155aa)
translation initiation factor IF-3 n=1 Tax=Rudaea cellulosilytica RepID=UPI00036FEDB4
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
translation initiation factor IF-3; K02520 translation initiation factor IF-3
Displaying items 91-120 of 352 in total

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