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SCNpilot_bf_inoc_scaffold_16_curated

Search features with annotation key words

Displaying items 301-330 of 540 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_16_curated_301
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(363147..365651)
DNA (2505bp) protein (835aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
peptidase n=1 Tax=Rudaea cellulosilytica RepID=UPI00037FC9C8
ATP-dependent proteinase
SCNpilot_bf_inoc_scaffold_16_curated_302
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(365889..367166)
DNA (1278bp) protein (426aa)
ATP-dependent protease n=1 Tax=Dyella ginsengisoli RepID=UPI00034B2E5D
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
endopeptidase Clp ATP-binding regulatory subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
SCNpilot_bf_inoc_scaffold_16_curated_303
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(367282..367914)
DNA (633bp) protein (211aa)
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit id=2826665 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Tax=GWF1_Xanthomonadales_69_6_curated
SCNpilot_bf_inoc_scaffold_16_curated_304
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(368035..369333)
DNA (1299bp) protein (433aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003825EB7
trigger factor
SCNpilot_bf_inoc_scaffold_16_curated_305
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(370925..371125)
DNA (201bp) protein (67aa)
Carbon storage regulator homolog n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W444_9GAMM
Carbon storage regulator homolog {ECO:0000256|HAMAP-Rule:MF_00167, ECO:0000256|SAAS:SAAS00093889}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
carbon storage regulator; K03563 carbon storage regulator
SCNpilot_bf_inoc_scaffold_16_curated_306
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(371465..374125)
DNA (2661bp) protein (887aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
alanyl-tRNA synthetase n=1 Tax=Rudaea cellulosilytica RepID=UPI00037ACFC6
SCNpilot_bf_inoc_scaffold_16_curated_307
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(374290..374985)
DNA (696bp) protein (232aa)
Regulatory protein RecX n=1 Tax=Rhodanobacter sp. 115 RepID=I4W261_9GAMM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_16_curated_308
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists


comp(375241..376278)
DNA (1038bp) protein (346aa)
recombinase RecA n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B69960
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
recA; recombinase A; K03553 recombination protein RecA
SCNpilot_bf_inoc_scaffold_16_curated_309

Not on your lists

comp(376415..376924)
DNA (510bp) protein (170aa)
Competence/damage-inducible protein CinA n=1 Tax=mine drainage metagenome RepID=T1BS81_9ZZZZ
Competence/damage-inducible protein CinA {ECO:0000313|EMBL:EQD75766.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
competence/damage-inducible protein CinA-like protein
SCNpilot_bf_inoc_scaffold_16_curated_310
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

377323..379743
DNA (2421bp) protein (807aa)
Transcriptional regulator, CadC n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NPR7_GRAMM
Transcriptional regulator {ECO:0000313|EMBL:KGQ17969.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
transcriptional regulator CadC
SCNpilot_bf_inoc_scaffold_16_curated_311
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

379901..380935
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003782DDE
transcriptional regulator TrmB
Transcriptional regulator, TrmB {ECO:0000313|EMBL:ADD43166.1}; TaxID=446470 species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
SCNpilot_bf_inoc_scaffold_16_curated_312
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

381118..383490
DNA (2373bp) protein (791aa)
Laccase family multicopper oxidase n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0WDU7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW69199.1}; Flags: Precursor;; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
SCNpilot_bf_inoc_scaffold_16_curated_313
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

383490..387074
DNA (3585bp) protein (1195aa)
APHP domain protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HG83_ANADF
APHP domain-containing protein
Tax=RBG_13_OP8X_37_8_curated
SCNpilot_bf_inoc_scaffold_16_curated_314
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

387221..387661
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI00035F3E84
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_16_curated_315
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

387706..390171
DNA (2466bp) protein (822aa)
Transcriptional regulator domain protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ESP8_METSB
transcriptional regulator domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_16_curated_316
Leptolyngbya sp. PCC 7376, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

390558..391970
DNA (1413bp) protein (471aa)
Filamentous hemagglutinin family outer membrane protein n=1 Tax=Leptolyngbya sp. PCC 7376 RepID=K9PWZ6_9CYAN
filamentous hemagglutinin family outer membrane protein
Filamentous hemagglutinin family outer membrane protein {ECO:0000313|EMBL:AFY37648.1}; Flags: Precursor;; TaxID=111781 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7376.;"
SCNpilot_bf_inoc_scaffold_16_curated_317
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(392281..395271)
DNA (2991bp) protein (997aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037BF3B7
peptidase S8 family protein
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
SCNpilot_bf_inoc_scaffold_16_curated_318
GWF2_Bacteroidetes_43_63_curated, Bacteroidetes, Bacteria

Not on your lists

comp(395369..400954)
DNA (5586bp) protein (1862aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI00036C14E2
hypothetical protein
Tax=GWF2_Bacteroidetes_43_63_curated
SCNpilot_bf_inoc_scaffold_16_curated_319
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(401274..403673)
DNA (2400bp) protein (800aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F34B69
Transcriptional regulator {ECO:0000313|EMBL:KGQ17969.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
CadC family transcriptional regulator
SCNpilot_bf_inoc_scaffold_16_curated_320
unknown

Not on your lists

404232..405416
DNA (1185bp) protein (395aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_16_curated_321
RIFOXYA2_FULL_Elusimicrobia_53_38_curated, Elusimicrobia, Bacteria

Not on your lists

comp(405680..407821)
DNA (2142bp) protein (714aa)
Putative V8-like Glu-specific endopeptidase id=2594629 bin=GWA2_Elusi_like_61_42 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi
putative peptidase
Tax=RIFOXYA2_FULL_Elusimicrobia_53_38_curated
SCNpilot_bf_inoc_scaffold_16_curated_322
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(408200..409231)
DNA (1032bp) protein (344aa)
GAF sensor hybrid histidine kinase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTK7_9BURK
histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_bf_inoc_scaffold_16_curated_323
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(409874..412501)
DNA (2628bp) protein (876aa)
magnesium-translocating P-type ATPase; K01531 Mg2+-importing ATPase [EC:3.6.3.2]
Magnesium-translocating P-type ATPase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EN70_METSB
Magnesium-translocating P-type ATPase {ECO:0000313|EMBL:ACK49583.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_bf_inoc_scaffold_16_curated_324
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

413084..413620
DNA (537bp) protein (179aa)
Stress response DNA-binding protein (Dps) n=1 Tax=Burkholderia terrae BS001 RepID=I5CD59_9BURK
Stress response DNA-binding protein (Dps) {ECO:0000313|EMBL:EIM93827.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
ferritin-like domain-containing protein 1; K04047 starvation-inducible DNA-binding protein
SCNpilot_bf_inoc_scaffold_16_curated_325
unknown

Not on your lists

comp(413888..414280)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003714F30
SCNpilot_bf_inoc_scaffold_16_curated_326
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

414594..415952
DNA (1359bp) protein (453aa)
sodium:proton antiporter n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034B415A
Sodium/hydrogen exchanger {ECO:0000313|EMBL:EED65929.1}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
Sodium/hydrogen exchanger
SCNpilot_bf_inoc_scaffold_16_curated_327
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(416017..416736)
DNA (720bp) protein (240aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Pseudomonas fluorescens RepID=UPI0002F8D20E
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:CDF86775.1}; TaxID=1301098 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
Crp/Fnr family transcriptional regulator
SCNpilot_bf_inoc_scaffold_16_curated_328
unknown

Not on your lists

416862..417551
DNA (690bp) protein (230aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_16_curated_329
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

417741..420353
DNA (2613bp) protein (871aa)
DNA mismatch repair protein MutS n=1 Tax=Rudaea cellulosilytica RepID=UPI00037D9469
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
DNA mismatch repair protein MutS
SCNpilot_bf_inoc_scaffold_16_curated_330
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(420444..422666)
DNA (2223bp) protein (741aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003811729
TPR repeat-containing protein
TPR repeat-containing protein {ECO:0000313|EMBL:AGY56413.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
Displaying items 301-330 of 540 in total

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