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SCNpilot_bf_inoc_scaffold_568_curated

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_568_curated_1
unknown

Not on your lists

comp(2..268)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_568_curated_2
unknown

Not on your lists

comp(356..661)
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_568_curated_3
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

796..1821
DNA (1026bp) protein (342aa)
Putative uncharacterized protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8LAJ5_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EED40079.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_568_curated_4
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(2236..2817)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9FNC3_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:EKV02666.1}; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_568_curated_5
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2937..3788)
DNA (852bp) protein (284aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-
ksgA; KsgA/Dim1 family 16S ribosomal RNA methyltransferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036D95E9
SCNpilot_bf_inoc_scaffold_568_curated_6
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3785..4714)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003743C9D
XRE family transcriptional regulator {ECO:0000313|EMBL:ESJ25032.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
gcvA; LysR family transcriptional regulator; K03566 LysR family transcriptional regulator, glycine cleavage system transcriptional activator
SCNpilot_bf_inoc_scaffold_568_curated_7
Desulfovibrio sp. A2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4842..5762
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000361A977
Uncharacterized protein {ECO:0000313|EMBL:EGY25530.1}; TaxID=298701 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. A2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_568_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5868..6848)
DNA (981bp) protein (327aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVN0_9GAMM
SCNpilot_bf_inoc_scaffold_568_curated_9
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6874..8244)
DNA (1371bp) protein (457aa)
surA; ppic-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035E4FA9
Chaperone SurA {ECO:0000256|HAMAP-Rule:MF_01183, ECO:0000256|SAAS:SAAS00043023}; Peptidyl-prolyl cis-trans isomerase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Rotamase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Flags: Precursor;; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
SCNpilot_bf_inoc_scaffold_568_curated_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8361..10661)
DNA (2301bp) protein (767aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000363AEA2
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
organic solvent tolerance protein OstA
SCNpilot_bf_inoc_scaffold_568_curated_11
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10839..11234
DNA (396bp) protein (132aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
methionine sulfoxide reductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D8BFA
SCNpilot_bf_inoc_scaffold_568_curated_12
unknown

Not on your lists

comp(11241..11951)
DNA (711bp) protein (237aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_568_curated_13
unknown

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12120..12530
DNA (411bp) protein (137aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_568_curated_14

Not on your lists

comp(12583..13506)
DNA (924bp) protein (308aa)
Histone deacetylase superfamily protein n=2 Tax=mine drainage metagenome RepID=T0ZEK9_9ZZZZ
Histone deacetylase superfamily protein {ECO:0000313|EMBL:EQD43518.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
deacetylase, histone deacetylase/acetoin utilization protein
SCNpilot_bf_inoc_scaffold_568_curated_15
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13539..14105)
DNA (567bp) protein (189aa)
ATP--cobalamin adenosyltransferase n=1 Tax=Dyella japonica RepID=UPI000303698E
ATP--cobalamin adenosyltransferase {ECO:0000313|EMBL:AIF46923.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ATP:cob(I)alamin adenosyltransferase
SCNpilot_bf_inoc_scaffold_568_curated_16
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14332..16185
DNA (1854bp) protein (618aa)
Peptidase M48 Ste24p n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q7J8_ACIAP
peptidase M48 Ste24p
Peptidase M48 Ste24p {ECO:0000313|EMBL:ADX47071.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_bf_inoc_scaffold_568_curated_17

Not on your lists

comp(16228..16833)
DNA (606bp) protein (202aa)
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Phosphoglycerate mutase family protein n=3 Tax=mine drainage metagenome RepID=T1AN76_9ZZZZ
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EQD43515.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCNpilot_bf_inoc_scaffold_568_curated_18
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(16824..17579)
DNA (756bp) protein (252aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=1519464 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium sp. GBChlB.;"
cobalamin 5'-phosphate synthase; K02233 adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
Cobalamin synthase n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DLA8_9BURK
SCNpilot_bf_inoc_scaffold_568_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17705..18925
DNA (1221bp) protein (407aa)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC:1.14.13.-)
2-octaprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:AGG90317.1}; EC=1.14.13.- {ECO:0000313|EMBL:AGG90317.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
2-octaprenyl-6-methoxyphenol hydroxylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJN8_9GAMM
SCNpilot_bf_inoc_scaffold_568_curated_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18922..20100
DNA (1179bp) protein (393aa)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WEV2_9GAMM
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family {ECO:0000313|EMBL:AGG90316.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_568_curated_21
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

20285..22570
DNA (2286bp) protein (762aa)
IPT/TIG domain protein id=4086002 bin=GWF2_Bacteroidetes_38_335 species=Saprospira grandis genus=Saprospira taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
glycosyl hydrolase
Tax=CG_Ignavi_01
SCNpilot_bf_inoc_scaffold_568_curated_22
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22639..23082)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00035F883C
Uncharacterized protein {ECO:0000313|EMBL:GAO38906.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_bf_inoc_scaffold_568_curated_23
Streptomyces turgidiscabies, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23216..24436)
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Streptomyces sp. 303MFCol5.2 RepID=UPI00035CA5EA
Uncharacterized protein {ECO:0000313|EMBL:ELP61879.1}; TaxID=698760 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces turgidiscabies Car8.;"
SCNpilot_bf_inoc_scaffold_568_curated_24
Geminocystis sp. NIES-3709, Geminocystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

24633..27212
DNA (2580bp) protein (860aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI00037C0C48
Alkaline phosphatase {ECO:0000313|EMBL:BAQ65373.1}; TaxID=1617448 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Geminocystis.;" source="Geminocystis sp. NIES-3709.;"
putative extracellular nuclease
SCNpilot_bf_inoc_scaffold_568_curated_25
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27263..28993)
DNA (1731bp) protein (577aa)
Signal transduction histidine kinase n=1 Tax=Acidovorax sp. CF316 RepID=J1EFM3_9BURK
Atypical hybrid histidine kinase {ECO:0000313|EMBL:KGQ18196.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
response regulator receiver sensor hybrid histidine kinase
SCNpilot_bf_inoc_scaffold_568_curated_26
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29003..33883)
DNA (4881bp) protein (1627aa)
GAF sensor hybrid histidine kinase (EC:2.7.13.3)
GAF sensor hybrid histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZ64_9BACT
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_bf_inoc_scaffold_568_curated_27
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34043..35155)
DNA (1113bp) protein (371aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KPW2_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:EYR66969.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
penicillin-binding protein, beta-lactamase class C
SCNpilot_bf_inoc_scaffold_568_curated_28
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35277..35789)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3GAR0_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EYR68652.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_568_curated_29
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35985..37271)
DNA (1287bp) protein (429aa)
Putative uncharacterized protein n=1 Tax=Janthinobacterium lividum RepID=A0SZ27_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EYR70120.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
SCNpilot_bf_inoc_scaffold_568_curated_30
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37549..38859)
DNA (1311bp) protein (437aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00036F4C32
acetamidase/formamidase
Acetamidase/Formamidase {ECO:0000313|EMBL:AFE04258.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
Displaying items 1-30 of 57 in total

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