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SCNpilot_bf_inoc_scaffold_126_curated

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Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_126_curated_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94..879
DNA (786bp) protein (262aa)
ISPsy2, transposase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN3_9GAMM
Transposase {ECO:0000313|EMBL:EIL87729.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative transposase, IS4 family
SCNpilot_bf_inoc_scaffold_126_curated_2
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1215..2456)
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5DDEA
Uncharacterized protein {ECO:0000313|EMBL:KFN44239.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
signal transduction histidine kinase
SCNpilot_bf_inoc_scaffold_126_curated_3
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2456..3133)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4455A
Uncharacterized protein {ECO:0000313|EMBL:KFN44240.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
SCNpilot_bf_inoc_scaffold_126_curated_4
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3291..5249
DNA (1959bp) protein (653aa)
sulfatase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B318B3
Uncharacterized protein {ECO:0000313|EMBL:KFN44241.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
phosphoglycerol transferase family protein, alkaline phosphatase superfamily
SCNpilot_bf_inoc_scaffold_126_curated_5
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5342..5620
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZRS3_9RHOO
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:BAO82862.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_126_curated_6
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5617..6168
DNA (552bp) protein (184aa)
N-acetyltransferase GCN5 n=1 Tax=Thauera terpenica 58Eu RepID=S9ZNM6_9RHOO
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EPZ16216.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
GCN5-like N-acetyltransferase
SCNpilot_bf_inoc_scaffold_126_curated_7
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6334..7080
DNA (747bp) protein (249aa)
Prolyl 4-hydroxylase, alpha subunit n=2 Tax=Burkholderia multivorans RepID=B9BRA5_9BURK
2OG-Fe(II) oxygenase superfamily protein {ECO:0000313|EMBL:AJX75426.1}; TaxID=1249472 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei MSHR2543.;"
hypothetical protein; K09990 hypothetical protein
SCNpilot_bf_inoc_scaffold_126_curated_8
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7313..8455)
DNA (1143bp) protein (381aa)
Two-component hybrid sensor and regulator n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2S9W5_9DELT
Two-component hybrid sensor and regulator {ECO:0000313|EMBL:KFE70722.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
sensor protein
SCNpilot_bf_inoc_scaffold_126_curated_9
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8452..9042)
DNA (591bp) protein (197aa)
cheB; protein-glutamate methylesterase (EC:3.1.1.61); K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]
Protein-glutamate methylesterase protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8J276_HERSS
Chemotaxis protein CheB {ECO:0000313|EMBL:KJA10017.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
SCNpilot_bf_inoc_scaffold_126_curated_10
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9042..9878)
DNA (837bp) protein (279aa)
CheR-type MCP methyltransferase; K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
MCP methyltransferase, CheR-type n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MD75_ACIET
MCP methyltransferase, CheR-type {ECO:0000313|EMBL:ACM32107.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_126_curated_11
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9875..13339)
DNA (3465bp) protein (1155aa)
two component hybrid sensor histidine kinase/response regulator protein (EC:2.7.3.-)
Two component hybrid sensor histidine kinase/response regulator protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0G9Q2_9BURK
Two component hybrid sensor histidine kinase/response regulator protein {ECO:0000313|EMBL:EOA05397.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
SCNpilot_bf_inoc_scaffold_126_curated_12
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13584..14027)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Janthinobacterium lividum RepID=UPI000287E709
Uncharacterized protein {ECO:0000313|EMBL:CDG82048.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_126_curated_13
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14424..15740
DNA (1317bp) protein (439aa)
Two-component response regulator {ECO:0000313|EMBL:KGQ18200.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
Sigma 54-dependent transcriptional activator containing CheY-like receiver domain id=2521426 bin=GWF1_Xanthomonadales_69_6 species=Hahella chejuensis genus=Hahella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
transcriptional regulator
SCNpilot_bf_inoc_scaffold_126_curated_14
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15805..16428
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003052703
Uncharacterized protein {ECO:0000313|EMBL:KGQ20477.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_126_curated_15
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16484..19051
DNA (2568bp) protein (856aa)
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase n=1 Tax=Xanthomonas sacchari RepID=UPI000262AB24
Uncharacterized protein {ECO:0000313|EMBL:KFN48259.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
SCNpilot_bf_inoc_scaffold_126_curated_16
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19152..19736
DNA (585bp) protein (195aa)
Putative outer membrane protein n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BIS6_9XANT
Membrane protein {ECO:0000313|EMBL:KHM90859.1}; TaxID=56460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_126_curated_17
Deinococcus sp. RL, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

19799..20515
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HNS1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEF33885.1}; TaxID=1489678 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus sp. RL.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_126_curated_18
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20528..21481)
DNA (954bp) protein (318aa)
Membrane protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HT14_PSEUO
Uncharacterized protein {ECO:0000313|EMBL:KFN45702.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_126_curated_19
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21468..22646)
DNA (1179bp) protein (393aa)
Cardiolipin synthase B {ECO:0000256|HAMAP-Rule:MF_01917}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_01917};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_01917};; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
cardiolipin synthase 2 (EC:2.7.8.-); K06132 putative cardiolipin synthase [EC:2.7.8.-]
hypothetical protein n=1 Tax=Pseudomonas luteola RepID=UPI0002E0F0F6
SCNpilot_bf_inoc_scaffold_126_curated_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22643..23449)
DNA (807bp) protein (269aa)
Metal-dependent hydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2T599_9BURK
Metal-dependent hydrolase {ECO:0000313|EMBL:EJL73212.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative endonuclease/exonuclease/phosphatase
SCNpilot_bf_inoc_scaffold_126_curated_21
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23446..24231)
DNA (786bp) protein (262aa)
trehalose-phosphatase (EC:3.1.3.12); K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
Trehalose-phosphatase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A2H1_STAND
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_bf_inoc_scaffold_126_curated_22
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24382..25845
DNA (1464bp) protein (488aa)
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) {ECO:0000256|RuleBase:RU362045}; EC=2.4.1.15 {ECO:0000256|RuleBase:RU362045};; Osmoregulatory trehalose synthesis protein A {ECO:0000256|RuleBase:RU362045}; Trehalose-6-phosphate synthase {ECO:0000256|RuleBase:RU362045}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Trehalose-6-phosphate synthase; K00697 trehalose 6-phosphate synthase [EC:2.4.1.15]
Trehalose-6-phosphate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGS1_9GAMM
SCNpilot_bf_inoc_scaffold_126_curated_23
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25842..29078
DNA (3237bp) protein (1079aa)
trehalose synthase; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16]
Trehalose synthase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UTA4_PSEUP
Trehalose synthase {ECO:0000313|EMBL:AER57350.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_bf_inoc_scaffold_126_curated_24
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29117..29332
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WP02_PSEUU
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV25901.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_bf_inoc_scaffold_126_curated_25
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29416..30351
DNA (936bp) protein (312aa)
Ku domain-containing protein n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00036149AC
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
Ku protein; K10979 DNA end-binding protein Ku
SCNpilot_bf_inoc_scaffold_126_curated_26
RIFOXYD1_FULL_Bdellovibrionales_53_11_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(30361..31854)
DNA (1494bp) protein (498aa)
UDP-N-acetylmuramyl-tripeptide synthetases; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase id=3068020 bin=GWB1_Deltaproteobacteria_rel_55_8 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
Tax=RIFOXYD1_FULL_Bdellovibrionales_53_11_curated
SCNpilot_bf_inoc_scaffold_126_curated_27
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32267..32788
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QZP6_ISOPI
Uncharacterized protein {ECO:0000313|EMBL:KJV34650.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_126_curated_28
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32876..33787)
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI000377E9E3
LysR family transcriptional regulator {ECO:0000313|EMBL:ESH88045.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
transcriptional regulator, LysR family
SCNpilot_bf_inoc_scaffold_126_curated_29
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34903..35256)
DNA (354bp) protein (118aa)
Uncharacterized protein id=1307792 bin=GWE1_T_denit_62_9 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_126_curated_30
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35438..36046)
DNA (609bp) protein (203aa)
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
NAD(P)H dehydrogenase (quinone); K01118 FMN-dependent NADH-azoreductase [EC:1.7.-.-]
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D90638
Displaying items 1-30 of 115 in total

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