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SCNpilot_bf_inoc_scaffold_231_curated

Search features with annotation key words

Displaying items 31-60 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_231_curated_31
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32078..33001
DNA (924bp) protein (308aa)
Lipid A biosynthesis lauroyltransferase {ECO:0000256|HAMAP-Rule:MF_01942}; EC=2.3.1.241 {ECO:0000256|HAMAP-Rule:MF_01942};; Kdo(2)-lipid IV(A) lauroyltransferase {ECO:0000256|HAMAP-Rule:MF_01942}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035E14A6
lipid A biosynthesis lauroyl/palmitoleoyl acyltransferase
SCNpilot_bf_inoc_scaffold_231_curated_32
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33101..36082
DNA (2982bp) protein (994aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037F1C10
Membrane protein {ECO:0000313|EMBL:AKC88168.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
putative transmembrane protein
SCNpilot_bf_inoc_scaffold_231_curated_33
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36079..37455
DNA (1377bp) protein (459aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WRC2_PSEUU
Membrane protein {ECO:0000313|EMBL:AKC88167.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_231_curated_34
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37489..38256)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034652F0
Lipopolysaccharide core biosynthesis glycosyl transferase {ECO:0000313|EMBL:GAN44927.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
glycosyl transferase
SCNpilot_bf_inoc_scaffold_231_curated_35
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38249..39523)
DNA (1275bp) protein (425aa)
Lipid A core--O-antigen ligase-like protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDV7_9GAMM
Lipid A core--O-antigen ligase-like protein {ECO:0000313|EMBL:EIL97648.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
lipid A core-O-antigen ligase-like enyme
SCNpilot_bf_inoc_scaffold_231_curated_36
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39789..40934)
DNA (1146bp) protein (382aa)
Glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHN0_9GAMM
Glycosyl transferase {ECO:0000313|EMBL:GAN44929.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
glycosyltransferase
SCNpilot_bf_inoc_scaffold_231_curated_37
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40945..41154)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003040DDD
Zinc finger, CHCC-type {ECO:0000313|EMBL:KJV36465.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_231_curated_38
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41351..41938
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHM8_9GAMM
Na+/proline symporter
Na+/proline symporter {ECO:0000313|EMBL:AGG87530.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_231_curated_39
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(41985..43457)
DNA (1473bp) protein (491aa)
Tyrosinase family protein n=1 Tax=Caulobacter sp. AP07 RepID=J2PRP6_9CAUL
Tyrosinase family protein {ECO:0000313|EMBL:KGQ20218.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
oxidoreductase rbh
SCNpilot_bf_inoc_scaffold_231_curated_40
unknown

Not on your lists

comp(43718..44239)
DNA (522bp) protein (174aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_231_curated_41
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44429..45109
DNA (681bp) protein (227aa)
Chemotaxis protein CheA (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKJ0_9GAMM
Chemotaxis protein CheA {ECO:0000313|EMBL:KGI78629.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
chemotaxis protein histidine kinase-like protein
SCNpilot_bf_inoc_scaffold_231_curated_42
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45170..46657
DNA (1488bp) protein (496aa)
Amidohydrolase n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X6V1_ACISM
Uncharacterized protein {ECO:0000313|EMBL:EYR68580.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
amidohydrolase
SCNpilot_bf_inoc_scaffold_231_curated_43

Not on your lists

comp(46661..47221)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036755E8
Marine sediment metagenome DNA, contig: S03H2_L00128 {ECO:0000313|EMBL:GAH28044.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
XRE family transcriptional regulator
SCNpilot_bf_inoc_scaffold_231_curated_44
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47478..47855)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7ZI62_9XANT
hypothetical protein; K09959 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL05048.1}; TaxID=990315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. raphani 756C.;"
SCNpilot_bf_inoc_scaffold_231_curated_45
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47976..49505)
DNA (1530bp) protein (510aa)
aldehyde dehydrogenase n=1 Tax=Xanthomonas sacchari RepID=UPI000262B359
Aldehyde dehydrogenase {ECO:0000313|EMBL:AJC46503.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
NAD-dependent aldehyde dehydrogenase
SCNpilot_bf_inoc_scaffold_231_curated_46
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49863..51791
DNA (1929bp) protein (643aa)
Fis family GAF modulated sigma-54 specific transcriptional regulator n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UU93_PSEUP
Fis family GAF modulated sigma-54 specific transcriptional regulator
Fis family GAF modulated sigma-54 specific transcriptional regulator {ECO:0000313|EMBL:AER54982.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_bf_inoc_scaffold_231_curated_47
Alcanivorax sp. 19-m-6, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51902..52531)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI0003488B1B
Uncharacterized protein {ECO:0000313|EMBL:KGD63168.1}; TaxID=1177154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. 19-m-6.;"
SCNpilot_bf_inoc_scaffold_231_curated_48
Alcanivorax sp. P2S70, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52528..53895)
DNA (1368bp) protein (456aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1397527 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. P2S70.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000369DB62
SCNpilot_bf_inoc_scaffold_231_curated_49
Alcanivorax sp. 19-m-6, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53979..55013)
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037A4994
Uncharacterized protein {ECO:0000313|EMBL:KGD63166.1}; TaxID=1177154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. 19-m-6.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_231_curated_50
unknown

Not on your lists

55336..56967
DNA (1632bp) protein (544aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_231_curated_51
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57191..58612)
DNA (1422bp) protein (474aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y585_THIV6
diguanylate cyclase
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AFL72153.1}; Flags: Precursor;; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
SCNpilot_bf_inoc_scaffold_231_curated_52
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59021..60511
DNA (1491bp) protein (497aa)
Nucleoside permease n=1 Tax=Saprospira grandis DSM 2844 RepID=J0P3K2_9SPHI
Na+ dependent nucleoside transporter domain-containing protein; K03317 concentrative nucleoside transporter, CNT family
Na+ dependent nucleoside transporter domain-containing protein {ECO:0000313|EMBL:KGE53156.1}; TaxID=325777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. vasculorum.;"
SCNpilot_bf_inoc_scaffold_231_curated_53
unknown

Not on your lists

60609..60938
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_231_curated_54
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60991..61950
DNA (960bp) protein (320aa)
PfkB domain-containing protein; K00852 ribokinase [EC:2.7.1.15]
Ribokinase {ECO:0000313|EMBL:GAN45320.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
PfkB domain protein id=2918739 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
SCNpilot_bf_inoc_scaffold_231_curated_55
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61971..62873)
DNA (903bp) protein (301aa)
Probable LysR-family transcriptional regulator n=1 Tax=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) RepID=Q7W6D8_BORPA
LysR family transcriptional regulator rbh
Probable LysR-family transcriptional regulator {ECO:0000313|EMBL:CAE38268.1}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;"
SCNpilot_bf_inoc_scaffold_231_curated_56
Pseudomonas balearica, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62975..64177
DNA (1203bp) protein (401aa)
sugar MFS transporter n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003472DC0
MFS sugar transporter {ECO:0000313|EMBL:AJE13538.1}; TaxID=1123016 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas balearica DSM 6083.;"
ydeA; putative transmembrane efflux protein
SCNpilot_bf_inoc_scaffold_231_curated_57
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64238..65041
DNA (804bp) protein (268aa)
2,5-diketo-D-gluconic acid reductase {ECO:0000313|EMBL:AHY57188.1}; EC=1.1.1.274 {ECO:0000313|EMBL:AHY57188.1};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
dkgB; 2,5-diketo-D-gluconate reductase B (EC:1.1.1.274)
2,5-diketo-D-gluconic acid reductase n=1 Tax=Cupriavidus sp. WS RepID=UPI00037118E7
SCNpilot_bf_inoc_scaffold_231_curated_58
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65220..65708)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Formosa sp. AK20 RepID=M7MDJ4_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFI06198.1}; TaxID=760117 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;"
SCNpilot_bf_inoc_scaffold_231_curated_59
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65799..66794
DNA (996bp) protein (332aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
tRNA-dihydrouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVR0_9GAMM
tRNA-U20-dihydrouridine synthase
SCNpilot_bf_inoc_scaffold_231_curated_60
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66870..67511
DNA (642bp) protein (214aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQB1_PSEUU
CDP-alcohol phosphatidyltransferase
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:ADV26360.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
Displaying items 31-60 of 109 in total

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