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SCNpilot_bf_inoc_scaffold_44_curated

Search features with annotation key words

Displaying items 181-210 of 512 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_44_curated_181
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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224382..225542
DNA (1161bp) protein (387aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
succinyl-CoA synthetase (ADP-forming) beta subunit (EC:6.2.1.5)
malate--CoA ligase subunit beta n=1 Tax=Rudaea cellulosilytica RepID=UPI000377D0E0
SCNpilot_bf_inoc_scaffold_44_curated_182

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225554..226429
DNA (876bp) protein (292aa)
succinyl-CoA synthetase (ADP-forming) alpha subunit (EC:6.2.1.5)
succinyl-CoA synthetase subunit alpha n=1 Tax=Rudaea cellulosilytica RepID=UPI000360CD0C
Succinyl-CoA synthetase subunit alpha {ECO:0000313|EMBL:EQD70259.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCNpilot_bf_inoc_scaffold_44_curated_183
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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226600..228429
DNA (1830bp) protein (610aa)
NAD synthetase {ECO:0000313|EMBL:EYR69105.1}; EC=6.3.5.1 {ECO:0000313|EMBL:EYR69105.1};; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
NAD synthetase; K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
NAD synthetase n=1 Tax=Rudaea cellulosilytica RepID=UPI00037A88F2
SCNpilot_bf_inoc_scaffold_44_curated_184
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(228439..229431)
DNA (993bp) protein (331aa)
Glucokinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NI81_9GAMM
glucokinase
Glucokinase {ECO:0000313|EMBL:AGG90604.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_44_curated_185
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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229685..230371
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VMK3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88444.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_186
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

230386..230967
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VMK2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88443.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_187
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(231061..233370)
DNA (2310bp) protein (770aa)
serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1]
Serine/threonine protein kinase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VMK1_9GAMM
Serine/threonine protein kinase {ECO:0000313|EMBL:EIL88442.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_bf_inoc_scaffold_44_curated_188
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(233378..233929)
DNA (552bp) protein (184aa)
RNA polymerase sigma factor n=1 Tax=Rhodanobacter sp. 115 RepID=I4VMK0_9GAMM
RNA polymerase sigma factor {ECO:0000313|EMBL:EIL88441.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_189
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(234039..234857)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003774D05
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
outer membrane assembly lipoprotein YfiO; K05807 putative lipoprotein
SCNpilot_bf_inoc_scaffold_44_curated_190
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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234941..235936
DNA (996bp) protein (332aa)
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000375A419
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_44_curated_191
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

235939..237411
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY25_9GAMM
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
uncharacterized protein, YfiH family
SCNpilot_bf_inoc_scaffold_44_curated_192
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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237404..237811
DNA (408bp) protein (136aa)
Putative transmembrane protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FRR5_STRMK
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:CAQ47155.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
SCNpilot_bf_inoc_scaffold_44_curated_193
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(237883..239007)
DNA (1125bp) protein (375aa)
Saccharopine dehydrogenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRC7_9GAMM
Saccharopine dehydrogenase {ECO:0000313|EMBL:KGQ18829.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
Saccharopine dehydrogenase
SCNpilot_bf_inoc_scaffold_44_curated_194
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

239137..241740
DNA (2604bp) protein (868aa)
protein disaggregation chaperone n=1 Tax=Dyella ginsengisoli RepID=UPI000346B215
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
ATP-dependent chaperone ClpB
SCNpilot_bf_inoc_scaffold_44_curated_195
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

241822..242133
DNA (312bp) protein (104aa)
FmdB family regulatory protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGS9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFN48662.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
putative regulatory protein, FmdB family
SCNpilot_bf_inoc_scaffold_44_curated_196
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

242244..242795
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000362D40C
Uncharacterized protein {ECO:0000313|EMBL:AHX14519.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Protein of unknown function (DUF3011)
SCNpilot_bf_inoc_scaffold_44_curated_197
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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242956..244728
DNA (1773bp) protein (591aa)
aspartyl-tRNA synthetase n=1 Tax=Rudaea cellulosilytica RepID=UPI000378E140
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:AHX14518.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
aspartyl-tRNA synthetase
SCNpilot_bf_inoc_scaffold_44_curated_198
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

244934..245599
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003492F43
Uncharacterized protein {ECO:0000313|EMBL:KGI77021.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_199
unknown

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245865..246467
DNA (603bp) protein (201aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_44_curated_200
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

246834..247355
DNA (522bp) protein (174aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Holliday junction endonuclease RuvC (EC:3.1.22.4)
Holliday junction resolvase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B71377
SCNpilot_bf_inoc_scaffold_44_curated_201
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

247352..247945
DNA (594bp) protein (198aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction DNA helicase RuvA n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B53938
SCNpilot_bf_inoc_scaffold_44_curated_202
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

247977..249854
DNA (1878bp) protein (626aa)
Probable potassium transport system protein kup n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGT6_9GAMM
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
K+ transporter
SCNpilot_bf_inoc_scaffold_44_curated_203
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

249851..250885
DNA (1035bp) protein (345aa)
Holliday junction DNA helicase RuvB n=1 Tax=Dyella ginsengisoli RepID=UPI00034B7D6F
Holliday junction DNA helicase subunit RuvB
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_44_curated_204
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

250973..251386
DNA (414bp) protein (138aa)
tol-pal system-associated acyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Tol-pal system-associated acyl-CoA thioesterase n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L151_FRAAD
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:KGI77017.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_bf_inoc_scaffold_44_curated_205
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

251383..252066
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035DB090
Colicin transporter {ECO:0000313|EMBL:KGI77016.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
TolQ protein; K03562 biopolymer transport protein TolQ
SCNpilot_bf_inoc_scaffold_44_curated_206
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

252109..252546
DNA (438bp) protein (146aa)
Biopolymer transport, TolR n=1 Tax=mine drainage metagenome RepID=T1CG81_9ZZZZ
Biopolymer transporter TolR {ECO:0000313|EMBL:KGM54653.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
tolR; biopolymer transport tolr protein; K03560 biopolymer transport protein TolR
SCNpilot_bf_inoc_scaffold_44_curated_207
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

252557..253375
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037417E4
TolA protein {ECO:0000313|EMBL:EKU26117.1}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
tolA; biopolymer transport protein; K03646 colicin import membrane protein
SCNpilot_bf_inoc_scaffold_44_curated_208
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

253365..253733
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037417E4
Uncharacterized protein {ECO:0000313|EMBL:AHY58001.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
protein TolA; K03646 colicin import membrane protein
SCNpilot_bf_inoc_scaffold_44_curated_209
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

253746..255092
DNA (1347bp) protein (449aa)
translocation protein TolB n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4806D
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
tolB; translocation protein TolB; K03641 TolB protein
SCNpilot_bf_inoc_scaffold_44_curated_210
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

255163..255678
DNA (516bp) protein (172aa)
Peptidoglycan-associated lipoprotein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L146_FRAAD
peptidoglycan-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:AFC87201.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
Displaying items 181-210 of 512 in total

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