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SCNpilot_bf_inoc_scaffold_69_curated_100

Organism: scnpilot_dereplicated_Xanthomonadales_2

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: 117111..118058

Top 3 Functional Annotations

Value Algorithm Source
Lipopolysaccharide biosynthesis protein n=2 Tax=Pseudomonas syringae group RepID=Q888F6_PSESM similarity UNIREF
DB: UNIREF100
  • Identity: 63.7
  • Coverage: 306.0
  • Bit_score: 432
  • Evalue 3.20e-118
Strain LMCA8 contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31603.1}; TaxID=33069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas viridiflava.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.8
  • Coverage: 310.0
  • Bit_score: 436
  • Evalue 3.10e-119
lipopolysaccharide biosynthesis protein similarity KEGG
DB: KEGG
  • Identity: 63.7
  • Coverage: 306.0
  • Bit_score: 432
  • Evalue 9.90e-119
  • rbh

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Taxonomy

Pseudomonas viridiflava → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 948
ATGAGCCATTACGTCCATCCGCTGGGCTGCTGCGAAAGCAACCAGATCGGCGACCGCACGCGGGTCTGGGCCTTCGCCCACGTGCTGCCGGGCGCGCGCATCGGCGCCGACTGCAACATCTGCGACCATGTCTTCGTCGAGAACGACGTCGTCGTCGGCGACCGCGTCACGATCAAGTGCGGCGTGCAGCTCTGGGACGGCCTGCGCGTCGAGGACGACGTGTTCATCGGCCCGAACGCGACGTTCACGAACGATCCGTTCCCGCGCAGCAAGCAGTATCCCGAGGCGTTCGCACAGACCACGATAGGCCGCGGCGCGTCGATAGGCGCGAACGCGACGATACTGCCCGGCGTCGTCATCGGCCGCTACGCGATGATCGGCGCCGGTGCCGTGGTCACGCGCTCGGTGCCGCCGCATGCGATCGTCATGGGCAACCCGGCGCGCATCACCGGCTACGTGTCCTCGGCGCGGCAGCAGAGCAGCCGGCACGGCGGCGTCACGGCGTTTCCGCAGGAACCCGGCGTCATTGCGACCGAAGTGCGCGGCGTCACGCTGCACCGTCTGCGCCAGATCAACGATCTGCGCGGCAGCCTCAGCGTCGGCGAGTTCCCCGACGACATTCCGTTCCCGGTGCGGCGTTATTTCGTGATCTACGATGTGCCGAGCGCCGAGACGCGCGGCGAACATGCGCATCTGACCTGTCACGAATTCCTGATCTGCGTCAAAGGCAGCGTCGCGGTCGTCGTCGACGACGGCCAGCGCCGCCAGGAATTCCTGCTCGACCGGCCCGAACTCGGCCTGCACATGCCGCCGATGGTCTGGGGCATCCAGTACAAGTATTCCAGCGACGCGGTGCTGCTCGTGTTCGCCTCGCATCACTACGAGGCCGACGACTACGTGCGCGACTACGATCAGTTCGTCGCGCTGAAACAGGCCGCCGCCGGCTAG
PROTEIN sequence
Length: 316
MSHYVHPLGCCESNQIGDRTRVWAFAHVLPGARIGADCNICDHVFVENDVVVGDRVTIKCGVQLWDGLRVEDDVFIGPNATFTNDPFPRSKQYPEAFAQTTIGRGASIGANATILPGVVIGRYAMIGAGAVVTRSVPPHAIVMGNPARITGYVSSARQQSSRHGGVTAFPQEPGVIATEVRGVTLHRLRQINDLRGSLSVGEFPDDIPFPVRRYFVIYDVPSAETRGEHAHLTCHEFLICVKGSVAVVVDDGQRRQEFLLDRPELGLHMPPMVWGIQYKYSSDAVLLVFASHHYEADDYVRDYDQFVALKQAAAG*