ggKbase home page

SCNpilot_bf_inoc_scaffold_69_curated

Search features with annotation key words

Displaying items 1-30 of 272 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_69_curated_1
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..3974)
DNA (3972bp) protein (1324aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WUM8_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD43513.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
conserved repeat domain protein
SCNpilot_bf_inoc_scaffold_69_curated_2
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4450..5073
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5C5D6
Uncharacterized protein {ECO:0000313|EMBL:KFN42572.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
hypothetical membrane protein
SCNpilot_bf_inoc_scaffold_69_curated_3
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5070..5291
DNA (222bp) protein (74aa)
XRE family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B6E08F
XRE family transcriptional regulator {ECO:0000313|EMBL:AKC85939.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
XRE family transcriptional regulator; K07729 putative transcriptional regulator
SCNpilot_bf_inoc_scaffold_69_curated_4
Asticcacaulis sp. AC402, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5496..6044)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC402 RepID=V4Q7X3_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ75333.1}; TaxID=1282361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC402.;"
TetR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_69_curated_5
Asticcacaulis biprosthecium, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6153..6836
DNA (684bp) protein (228aa)
Putative membrane protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QQE7_9CAUL
Putative membrane protein {ECO:0000313|EMBL:EGF90434.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis biprosthecum C19.;"
SCNpilot_bf_inoc_scaffold_69_curated_6
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6860..7654)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00038224A2
Inositol-phosphate phosphatase {ECO:0000313|EMBL:GAN45281.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
inositol monophosphatase/fructose-1,6-bisphosphatase family protein
SCNpilot_bf_inoc_scaffold_69_curated_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7669..8436)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003667DFD
Type II secretion system protein N (GspN) {ECO:0000313|EMBL:EIL91099.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_bf_inoc_scaffold_69_curated_8
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8485..8973)
DNA (489bp) protein (163aa)
Type II secretion system protein M n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GU53_THISH
General secretion pathway M protein; K02462 general secretion pathway protein M
Type II secretion system protein M {ECO:0000256|PIRNR:PIRNR006291}; Short=T2SS protein M {ECO:0000256|PIRNR:PIRNR006291};; General secretion pathway protein M {ECO:0000256|PIRNR:PIRNR006291}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_bf_inoc_scaffold_69_curated_9
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8970..10139)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00035D4907
general secretion pathway protein L; K02461 general secretion pathway protein L
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_bf_inoc_scaffold_69_curated_10
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10354..11286)
DNA (933bp) protein (311aa)
Type II secretion system protein K n=1 Tax=Beggiatoa alba B18LD RepID=I3CJX0_9GAMM
general secretion pathway protein K
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_bf_inoc_scaffold_69_curated_11
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11289..11894)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AU22_PSERE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN47761.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resinovorans NBRC 106553.;"
SCNpilot_bf_inoc_scaffold_69_curated_12
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11891..12307)
DNA (417bp) protein (139aa)
General secretion pathway protein I n=1 Tax=Beggiatoa alba B18LD RepID=I3CHA3_9GAMM
General secretion pathway protein I {ECO:0000313|EMBL:BAP56778.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
general secretion pathway protein I; K02458 general secretion pathway protein I
SCNpilot_bf_inoc_scaffold_69_curated_13
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12294..12908)
DNA (615bp) protein (205aa)
general secretion pathway protein H n=1 Tax=Aeromonas hydrophila RepID=UPI0003068941
gspH; general secretion pathway protein H; K02457 general secretion pathway protein H
Ral secretory pathway protein H {ECO:0000313|EMBL:ERJ17920.1}; TaxID=1033802 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera shabanensis E1L3A.;"
SCNpilot_bf_inoc_scaffold_69_curated_14
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12950..13399)
DNA (450bp) protein (150aa)
general secretion pathway protein G n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003720CE1
general secretion pathway protein G; K02456 general secretion pathway protein G
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_bf_inoc_scaffold_69_curated_15
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13450..14817
DNA (1368bp) protein (456aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; EC=2.6.1.62 {ECO:0000256|HAMAP-Rule:MF_00834};; 7,8-diamino-pelargonic acid aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; 7,8-diaminononanoate synthase {ECO:0000256|HAMAP-Rule:MF_00834}; Diaminopelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00834}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDS5_9GAMM
adenosylmethionine-8-amino-7-oxononanoate transaminase
SCNpilot_bf_inoc_scaffold_69_curated_16
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14909..15829)
DNA (921bp) protein (307aa)
Transcriptional regulator, LysR family n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q141L9_BURXL
LysR family transcriptional regulator {ECO:0000313|EMBL:KGM55773.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
LysR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_69_curated_17
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15940..16689
DNA (750bp) protein (250aa)
Short chain dehydrogenase n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SHV0_9BURK
Short-chain dehydrogenase {ECO:0000313|EMBL:KGM55772.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
short chain dehydrogenase family protein 34
SCNpilot_bf_inoc_scaffold_69_curated_18
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16911..19157
DNA (2247bp) protein (749aa)
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5U5M9_STEMA
Uncharacterized protein {ECO:0000313|EMBL:KFL35756.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_bf_inoc_scaffold_69_curated_19
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19184..20239
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI0003711690
Uncharacterized protein {ECO:0000313|EMBL:KFL35755.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_69_curated_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20486..21226
DNA (741bp) protein (247aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000361FF0E
RNA methyltransferase, RsmE family
SCNpilot_bf_inoc_scaffold_69_curated_21
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21610..22071)
DNA (462bp) protein (154aa)
Chemotaxis-related protein n=1 Tax=mine drainage metagenome RepID=T0Z811_9ZZZZ
Chemotaxis protein CheW {ECO:0000313|EMBL:GAN45983.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
chemotaxis signal transduction protein
SCNpilot_bf_inoc_scaffold_69_curated_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22080..24347)
DNA (2268bp) protein (756aa)
protein-glutamate methylesterase (EC:3.1.1.61); K06597 chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
CheB methylesterase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV62_9GAMM
CheB methylesterase {ECO:0000313|EMBL:EIL91103.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_bf_inoc_scaffold_69_curated_23
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24340..31242)
DNA (6903bp) protein (2301aa)
frzE; putative gliding motility sensor histidine kinase response regulator fusion transcriptional regulator (EC:2.7.13.3); K02487 type IV pili sensor histidine kinase and response regulator; K06596 chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7VCW4_STEMA
Uncharacterized protein {ECO:0000313|EMBL:KFL37216.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
SCNpilot_bf_inoc_scaffold_69_curated_24
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31254..32126)
DNA (873bp) protein (291aa)
pilK; methyltransferase PilK; K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
Methyltransferase PilK n=3 Tax=mine drainage metagenome RepID=T1CEI6_9ZZZZ
Methyltransferase {ECO:0000313|EMBL:GAN45284.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_bf_inoc_scaffold_69_curated_25
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32166..34199)
DNA (2034bp) protein (678aa)
Methyl-accepting chemotaxis protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ29_9GAMM
Chemotaxis protein {ECO:0000313|EMBL:GAN45285.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
methyl-accepting chemotaxis protein
SCNpilot_bf_inoc_scaffold_69_curated_26
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34261..34815)
DNA (555bp) protein (185aa)
Chemotaxis protein CheW {ECO:0000313|EMBL:GAN45286.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Chemotaxis signal transduction protein id=2704647 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
chemotaxis signal transduction protein
SCNpilot_bf_inoc_scaffold_69_curated_27
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34827..35192)
DNA (366bp) protein (122aa)
Type IV pilus response regulator PilH n=1 Tax=mine drainage metagenome RepID=T1B5H2_9ZZZZ
Chemotaxis protein CheY {ECO:0000313|EMBL:GAN45287.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
SCNpilot_bf_inoc_scaffold_69_curated_28
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35245..35649)
DNA (405bp) protein (135aa)
pilus response regulator PilG n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B47E58
Pilus assembly protein PilG {ECO:0000313|EMBL:GAN45288.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
pilG; putative two component system response regulator; K02657 twitching motility two-component system response regulator PilG
SCNpilot_bf_inoc_scaffold_69_curated_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35956..36903
DNA (948bp) protein (316aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase n=1 Tax=mine drainage metagenome RepID=T1AXJ6_9ZZZZ
SCNpilot_bf_inoc_scaffold_69_curated_30
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36900..37763
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E00F7C
Energy transducer TonB {ECO:0000313|EMBL:GAN45290.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
TonB family protein
Displaying items 1-30 of 272 in total

View Taxonomy