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SCNpilot_bf_inoc_scaffold_69_curated

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Displaying items 31-60 of 272 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_69_curated_31
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37865..38431
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F90337
UPF0301 protein MBSD_1837 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative transcriptional regulator
SCNpilot_bf_inoc_scaffold_69_curated_32
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38517..38936
DNA (420bp) protein (140aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Putative Holliday junction resolvase id=2704660 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
RNAse H-fold protein YqgF
SCNpilot_bf_inoc_scaffold_69_curated_33
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38933..39883
DNA (951bp) protein (317aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
aspartate carbamoyltransferase; K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
Aspartate carbamoyltransferase n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L5P2_FRAAD
SCNpilot_bf_inoc_scaffold_69_curated_34
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39980..41656
DNA (1677bp) protein (559aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C1A9D
Uncharacterized protein {ECO:0000313|EMBL:EIL95591.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_69_curated_35
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41944..43071)
DNA (1128bp) protein (376aa)
twitching motility protein PilT n=1 Tax=Dyella ginsengisoli RepID=UPI0003482795
Twitching motility protein PilT {ECO:0000313|EMBL:GAN45294.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
pilus retraction protein PilT
SCNpilot_bf_inoc_scaffold_69_curated_36
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43211..44248)
DNA (1038bp) protein (346aa)
Twitching motility protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUT4_9GAMM
Twitching motility protein PilT {ECO:0000313|EMBL:GAN45295.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
pilus retraction ATPase PilT
SCNpilot_bf_inoc_scaffold_69_curated_37
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44339..45022
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003710E8F
Uncharacterized protein {ECO:0000313|EMBL:KFN45620.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
hypothetical protein; K06997
SCNpilot_bf_inoc_scaffold_69_curated_38
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45150..45992
DNA (843bp) protein (281aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Pyrroline-5-carboxylate reductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJU9_9GAMM
pyrroline-5-carboxylate reductase
SCNpilot_bf_inoc_scaffold_69_curated_39
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45996..46571
DNA (576bp) protein (192aa)
membrane protein n=1 Tax=Pseudomonas tolaasii RepID=UPI00031D6B63
YGGT family protein
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
SCNpilot_bf_inoc_scaffold_69_curated_40
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46620..47072
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Thalassolituus oleivorans MIL-1 RepID=M5DWU1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45296.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_69_curated_41

Not on your lists

47069..47779
DNA (711bp) protein (237aa)
Phosphoglycerate mutase family protein n=1 Tax=mine drainage metagenome RepID=T0ZJ18_9ZZZZ
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EQD28709.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
phosphoglycerate mutase
SCNpilot_bf_inoc_scaffold_69_curated_42
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47939..48427)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000365F371
Membrane protein {ECO:0000313|EMBL:GAN45237.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_69_curated_43
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48428..49312)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036FEDE0
Uncharacterized protein {ECO:0000313|EMBL:GAN45238.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
beta-propeller domain-containing protein, methanol dehydrogenase
SCNpilot_bf_inoc_scaffold_69_curated_44
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49356..49973)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037FA7DF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88057.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_69_curated_45
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50121..51146
DNA (1026bp) protein (342aa)
aminoglycoside phosphotransferase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B37633
Uncharacterized protein {ECO:0000313|EMBL:KFN45615.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
aminoglycoside phosphotransferase; K06979
SCNpilot_bf_inoc_scaffold_69_curated_46
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51205..52218)
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B388E5
Uncharacterized protein {ECO:0000313|EMBL:KFN43432.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
lipase chaperone
SCNpilot_bf_inoc_scaffold_69_curated_47
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52215..53144)
DNA (930bp) protein (310aa)
lactonizing lipase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B769CC
Uncharacterized protein {ECO:0000313|EMBL:KFN43433.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
lip; lipase
SCNpilot_bf_inoc_scaffold_69_curated_48
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53481..58220)
DNA (4740bp) protein (1580aa)
type IV secretion protein Rhs n=1 Tax=Xanthomonas sacchari RepID=UPI000262A179
RHS repeat-associated core domain-containing protein
RHS repeat-associated core domain-containing protein {ECO:0000313|EMBL:AEM50359.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
SCNpilot_bf_inoc_scaffold_69_curated_49
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58824..59642)
DNA (819bp) protein (273aa)
Substrate-binding protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAY9_9GAMM
Substrate-binding protein {ECO:0000313|EMBL:EIL96630.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ABC-type Fe3+-hydroxamate transport system, periplasmic component
SCNpilot_bf_inoc_scaffold_69_curated_50
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59639..60265)
DNA (627bp) protein (209aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSC3_9GAMM
SCNpilot_bf_inoc_scaffold_69_curated_51
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60273..61790)
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JIU2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESQ12275.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain-containing protein
SCNpilot_bf_inoc_scaffold_69_curated_52
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61787..62287)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI000374A941
Ras-related GTP-binding protein {ECO:0000313|EMBL:KHD04845.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
hypothetical protein; K06883
SCNpilot_bf_inoc_scaffold_69_curated_53
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62284..64002)
DNA (1719bp) protein (573aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4L535_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESQ12273.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_69_curated_54
Chroococcales cyanobacterium CENA595, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(64020..64673)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI000378188E
Uncharacterized protein {ECO:0000313|EMBL:KJH69748.1}; TaxID=1618023 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales.;" source="Chroococcales cyanobacterium CENA595.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_69_curated_55
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64716..65414)
DNA (699bp) protein (233aa)
Two component transcriptional regulator, winged helix family n=1 Tax=mine drainage metagenome RepID=T1B525_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:GAN45926.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
two component transcriptional regulator, winged helix family
SCNpilot_bf_inoc_scaffold_69_curated_56
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65458..65661)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037C916B
Uncharacterized protein {ECO:0000313|EMBL:EIL92650.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_69_curated_57
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65800..66651)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Bordetella parapertussis (strain Bpp5) RepID=K0ML33_BORPB
hypothetical protein
Epimerase {ECO:0000313|EMBL:KGI78610.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_bf_inoc_scaffold_69_curated_58
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66648..67187)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003827323
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM34822.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_bf_inoc_scaffold_69_curated_59
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67400..67948
DNA (549bp) protein (183aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
aroK; shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000365E5C1
SCNpilot_bf_inoc_scaffold_69_curated_60
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67945..69027
DNA (1083bp) protein (361aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Dyella japonica RepID=UPI0002EF4569
Displaying items 31-60 of 272 in total

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