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SCNpilot_bf_inoc_scaffold_69_curated

Search features with annotation key words

Displaying items 121-150 of 272 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_69_curated_121
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(146767..148848)
DNA (2082bp) protein (694aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003719580
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:GAN45370.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_bf_inoc_scaffold_69_curated_122
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(148871..149254)
DNA (384bp) protein (128aa)
Endoribonuclease {ECO:0000313|EMBL:GAN45371.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
endoribonuclease L-PSP; K07567 TdcF protein
Endoribonuclease L-PSP id=2556732 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Stenotrophomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
SCNpilot_bf_inoc_scaffold_69_curated_123
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(149357..151522)
DNA (2166bp) protein (722aa)
bifunctional (p)ppGpp synthetase II/ guanosine-3'''',5''''-bis pyrophosphate 3''''-pyrophosphohydrolase n=1 Tax=Dyella japonica RepID=UPI0003171CBA
(P)ppGpp synthetase {ECO:0000313|EMBL:GAN45372.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
(p)ppGpp synthetase, RelA/SpoT family
SCNpilot_bf_inoc_scaffold_69_curated_124
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(151574..151867)
DNA (294bp) protein (98aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; DNA-directed RNA polymerase subunit omega; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomo
DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega n=1 Tax=Rhodanobacter sp. 115 RepID=I4WFQ7_9GAMM
SCNpilot_bf_inoc_scaffold_69_curated_125
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

152114..152947
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003746BD7
ABC transporter {ECO:0000313|EMBL:AHX11870.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
surface lipoprotein
SCNpilot_bf_inoc_scaffold_69_curated_126
unknown

Not on your lists

comp(153141..153584)
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_69_curated_127
unknown

Not on your lists

153863..154342
DNA (480bp) protein (160aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_69_curated_128
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(154348..156438)
DNA (2091bp) protein (697aa)
Putative PAS/PAC sensor protein n=1 Tax=Shewanella woodyi (strain ATCC 51908 / MS32) RepID=B1KHQ5_SHEWM
Uncharacterized protein {ECO:0000313|EMBL:EYR70087.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
putative PAS/PAC sensor protein
SCNpilot_bf_inoc_scaffold_69_curated_129
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(156487..156792)
DNA (306bp) protein (102aa)
Putative NTP binding protein (Contains STAS domain) n=1 Tax=Rhodanobacter denitrificans RepID=I4WVX9_9GAMM
putative NTP binding protein (contains STAS domain)
Putative NTP binding protein (Contains STAS domain) {ECO:0000313|EMBL:AGG90419.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_69_curated_130
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(156789..157427)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036325B0
Toluene tolerance protein {ECO:0000313|EMBL:AHX11868.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ABC-type transport system involved in resistance to organic solvents, auxiliary component
SCNpilot_bf_inoc_scaffold_69_curated_131
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(157437..157955)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036F7BF1
Mammalian cell entry protein {ECO:0000313|EMBL:GAN45374.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein; K02067 putative ABC transport system substrate-binding protein
SCNpilot_bf_inoc_scaffold_69_curated_132
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(157972..158742)
DNA (771bp) protein (257aa)
ABC transporter permease n=1 Tax=Rudaea cellulosilytica RepID=UPI0003748F65
ABC transporter permease {ECO:0000313|EMBL:GAN45375.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein; K02066 putative ABC transport system permease protein
SCNpilot_bf_inoc_scaffold_69_curated_133
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(158739..159569)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037E839E
Toluene ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAN45376.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ABC-type transport system involved in resistance to organic solvents, ATPase component; K02065 putative ABC transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_69_curated_134
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(159649..160263)
DNA (615bp) protein (205aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2B9_9GAMM
SCNpilot_bf_inoc_scaffold_69_curated_135
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

160858..161580
DNA (723bp) protein (241aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN46612.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
SCNpilot_bf_inoc_scaffold_69_curated_136
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(161769..162704)
DNA (936bp) protein (312aa)
AraC family transcriptional regulator n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XH27_9RALS
AraC family transcriptional regulator {ECO:0000313|EMBL:EON18305.1}; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
AraC family transcriptional regulator
SCNpilot_bf_inoc_scaffold_69_curated_137
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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162766..163509
DNA (744bp) protein (248aa)
Putative dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AD48_GEMAT
AraC family transcriptional regulator {ECO:0000313|EMBL:KGH28527.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
putative dehydrogenase
SCNpilot_bf_inoc_scaffold_69_curated_138
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163599..164462)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036AD5E3
Uncharacterized protein {ECO:0000313|EMBL:GAN45378.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
TIGR00255 family protein
SCNpilot_bf_inoc_scaffold_69_curated_139
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

164660..165388
DNA (729bp) protein (243aa)
rph; ribonuclease PH; K00989 ribonuclease PH [EC:2.7.7.56]
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
ribonuclease PH n=1 Tax=Rudaea cellulosilytica RepID=UPI00036C25A4
SCNpilot_bf_inoc_scaffold_69_curated_140
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


165400..166017
DNA (618bp) protein (206aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae
nucleoside-triphosphate diphosphatase n=1 Tax=Dyella ginsengisoli RepID=UPI000345F11F
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
SCNpilot_bf_inoc_scaffold_69_curated_141
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

166014..167171
DNA (1158bp) protein (386aa)
HemN family oxidoreductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRK9_9GAMM
putative oxygen-independent coproporphyrinogen III oxidase
HemN family oxidoreductase {ECO:0000313|EMBL:EIL89850.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_bf_inoc_scaffold_69_curated_142
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

167266..167460
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037198AB
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
SCNpilot_bf_inoc_scaffold_69_curated_143
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

167577..170006
DNA (2430bp) protein (810aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034493CF
Protein of unknown function (DUF1631)
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_bf_inoc_scaffold_69_curated_144
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

170017..170364
DNA (348bp) protein (116aa)
Protein containing DUF1631 (Fragment) n=1 Tax=mine drainage metagenome RepID=T0Y450_9ZZZZ
Pilus biosynthesis protein PilZ {ECO:0000313|EMBL:GAN45387.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_69_curated_145
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

170372..171475
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B6632D
Uncharacterized protein {ECO:0000313|EMBL:KFN41979.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein
SCNpilot_bf_inoc_scaffold_69_curated_146
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(171469..172287)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXP5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91986.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_69_curated_147
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(172391..173131)
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000373C1F0
Uncharacterized protein {ECO:0000313|EMBL:KFN50590.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
HTH domain-containing protein
SCNpilot_bf_inoc_scaffold_69_curated_148
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

173264..174316
DNA (1053bp) protein (351aa)
3-oxoacyl-(Acyl carrier protein) synthase {ECO:0000313|EMBL:AIY16248.1}; EC=2.3.1.41 {ECO:0000313|EMBL:AIY16248.1};; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00037CA880
3-oxoacyl-[acyl-carrier-protein] synthase 3-like
SCNpilot_bf_inoc_scaffold_69_curated_149
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

174320..175189
DNA (870bp) protein (290aa)
lactamase n=2 Tax=Xanthomonas campestris RepID=UPI0001CBF331
Lactamase {ECO:0000313|EMBL:KFA13399.1}; TaxID=1094183 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. musacearum NCPPB 2005.;"
gumP; GumP protein
SCNpilot_bf_inoc_scaffold_69_curated_150
Gynuella sunshinyii, Gynuella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

175186..176139
DNA (954bp) protein (318aa)
NAD(P)H-dependent oxidoreductase (EC:1.1.1.-)
NAD(P)H-dependent oxidoreductase n=1 Tax=Xanthomonas campestris pv. campestris (strain B100) RepID=B0RRJ3_XANCB
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AJQ97696.1}; TaxID=1445510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillales; Gynuella.;" source="Gynuella sunshinyii YC6258.;"
Displaying items 121-150 of 272 in total

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