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SCNpilot_BF_INOC_scaffold_1939_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1939_curated_1
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..492)
DNA (492bp) protein (164aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
NADH dehydrogenase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2CCB7
Tax=BJP_IG2157_Clostridiales_52_13
SCNpilot_BF_INOC_scaffold_1939_curated_2
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(494..970)
DNA (477bp) protein (159aa)
NADH dehydrogenase n=1 Tax=Clostridium arbusti RepID=UPI000288C285
NADH:ubiquinone oxidoreductase 24 kD subunit
NADH dehydrogenase (Ubiquinone) 24 kDa subunit {ECO:0000313|EMBL:ABN51666.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
SCNpilot_BF_INOC_scaffold_1939_curated_3
Treponema azotonutricium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(985..2157)
DNA (1173bp) protein (391aa)
Serine phosphatase n=1 Tax=Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) RepID=F5YAK9_TREAZ rbh
serine phosphatase rbh
Serine phosphatase {ECO:0000313|EMBL:AEF83319.1}; TaxID=545695 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9).;"
SCNpilot_BF_INOC_scaffold_1939_curated_4
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2150..3337)
DNA (1188bp) protein (396aa)
Putative PAS/PAC sensor protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5ABM5_9CLOT rbh
Putative PAS/PAC sensor protein {ECO:0000313|EMBL:CCX36781.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
ferredoxin 2 rbh
SCNpilot_BF_INOC_scaffold_1939_curated_5
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3752..3991)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D6P9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG52995.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1939_curated_6
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4663..6051)
DNA (1389bp) protein (463aa)
dihydropyrimidine dehydrogenase subunit A n=1 Tax=Ruminococcus flavefaciens RepID=UPI000312BC01 rbh
Dihydropyrimidine dehydrogenase subunit A {ECO:0000313|EMBL:EWM52978.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
glutamate synthase (NADPH), homotetrameric rbh
SCNpilot_BF_INOC_scaffold_1939_curated_7
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(6053..6895)
DNA (843bp) protein (281aa)
Sulfide dehydrogenase (Flavoprotein) subunit SudB n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YNV3_9FIRM rbh
Sulfide dehydrogenase (Flavoprotein) subunit SudB {ECO:0000313|EMBL:CDD30301.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
oxidoreductase FAD/NAD(P)-binding domain-containing protein rbh
SCNpilot_BF_INOC_scaffold_1939_curated_8
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6972..8147)
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VSS0_9CLOT rbh
iron-containing alcohol dehydrogenase rbh
Tax=BJP_IG2157_Clostridiales_52_13
SCNpilot_BF_INOC_scaffold_1939_curated_9
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8318..9256)
DNA (939bp) protein (313aa)
Transcriptional regulator n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LEB3_RUMC1 rbh
Transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:CDD52722.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
SCNpilot_BF_INOC_scaffold_1939_curated_10
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9274..9930)
DNA (657bp) protein (219aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Ruminococcus sp. CAG:379 RepID=R6ZW26_9FIRM
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
CoA-binding protein
SCNpilot_BF_INOC_scaffold_1939_curated_11
unknown

Not on your lists

10649..11122
DNA (474bp) protein (158aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1939_curated_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11124..11564
DNA (441bp) protein (147aa)
Transcriptional regulator, ArsR family id=4073348 bin=GWF2_Clostridiales_38_85 species=Clostridium saccharolyticum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:KEH96462.1}; TaxID=1443117 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum D str. 16868.;"
ArsR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1939_curated_13
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11567..12580
DNA (1014bp) protein (338aa)
Permease family protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CM75_9CLOT rbh
Permease family protein {ECO:0000313|EMBL:CDA77818.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
permease rbh
SCNpilot_BF_INOC_scaffold_1939_curated_14
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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12595..12927
DNA (333bp) protein (111aa)
Putative uncharacterized protein id=4073276 bin=GWF2_Clostridiales_38_85 species=Oscillibacter valericigenes genus=Oscillibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
redox-active disulfide protein 2
Tax=GWF2_Clostridiales_38_85_curated
SCNpilot_BF_INOC_scaffold_1939_curated_15
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12952..14592
DNA (1641bp) protein (547aa)
NAD(FAD)-dependent dehydrogenase n=1 Tax=Clostridium sp. BNL1100 RepID=H2J8R9_9CLOT rbh
NAD(FAD)-dependent dehydrogenase rbh
NAD(FAD)-dependent dehydrogenase {ECO:0000313|EMBL:AEY67537.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
SCNpilot_BF_INOC_scaffold_1939_curated_16
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14598..15662
DNA (1065bp) protein (355aa)
Arsenical-resistance protein n=1 Tax=Clostridium sp. BNL1100 RepID=H2J8R8_9CLOT rbh
arsenical-resistance protein rbh
Tax=BJP_IG2069_Clostridiales_48_15
SCNpilot_BF_INOC_scaffold_1939_curated_17
Bacillus vireti, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15773..16531)
DNA (759bp) protein (253aa)
UPI0003D5FF19 related cluster n=1 Tax=unknown RepID=UPI0003D5FF19 rbh
MerR family transcriptional regulator {ECO:0000313|EMBL:ETI67992.1}; TaxID=1131730 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus vireti LMG 21834.;"
putative transcriptional regulator rbh
SCNpilot_BF_INOC_scaffold_1939_curated_18
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16956..17468
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BNL1100 RepID=H2JAE7_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY67741.1}; Flags: Precursor;; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
SCNpilot_BF_INOC_scaffold_1939_curated_19
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17461..17871
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FQF0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMS72596.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1939_curated_20
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

comp(17933..19693)
DNA (1761bp) protein (587aa)
mitochondrial ATP-dependent RNA helicase suv3 precursor id=3085948 bin=GWF2_Clostridiales_36_10 species=Clostridium arbusti genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute rbh
helicase domain protein rbh
Tax=GWF2_Clostridiales_36_10_curated
SCNpilot_BF_INOC_scaffold_1939_curated_21
Desulfitobacterium dehalogenans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19724..20212)
DNA (489bp) protein (163aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=756499 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 /; JW/IU-DC1).;"
RNA pseudouridylate synthase n=1 Tax=Desulfitobacterium sp. PCE1 RepID=UPI00036ED820
RluA family pseudouridine synthase
SCNpilot_BF_INOC_scaffold_1939_curated_22
Paenibacillus sp. TCA20, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20193..20567)
DNA (375bp) protein (125aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1499968 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. TCA20.;"
Pseudouridine synthase id=1804883 bin=GWB2_Desulfobacterales_56_26 species=Emticicia oligotrophica genus=Emticicia taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
RluA family pseudouridine synthase
SCNpilot_BF_INOC_scaffold_1939_curated_23
unknown

Not on your lists

21195..21632
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1939_curated_24
unknown

Not on your lists

comp(21546..22436)
DNA (891bp) protein (297aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1939_curated_25
Paenibacillus sp. FSL R7-269, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22438..22914)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Paenibacillus sp. HW567 RepID=UPI00037E2EBF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETT45580.1}; TaxID=1226755 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-269.;"
SCNpilot_BF_INOC_scaffold_1939_curated_26
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(22963..23253)
DNA (291bp) protein (97aa)
hypothetical protein id=14632557 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Tax=CSP1_3_Armatimonadetes
SCNpilot_BF_INOC_scaffold_1939_curated_27
BJP_IG2103_Methanoregula_55_19, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(23304..23927)
DNA (624bp) protein (208aa)
3-methyladenine DNA glycosylase n=1 Tax=Clostridium tunisiense RepID=UPI0003157330
HhH-GPD superfamily base excision DNA repair protein
Tax=BJP_IG2103_Methanoregula_55_19
SCNpilot_BF_INOC_scaffold_1939_curated_28
unknown

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comp(23938..24156)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1939_curated_29
unknown

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comp(24153..24965)
DNA (813bp) protein (271aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1939_curated_30
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25136..25426)
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U507_ETHHY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU26713.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
Displaying items 1-30 of 38 in total

View Taxonomy