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SCNpilot_BF_INOC_scaffold_582_curated

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_582_curated_1
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..1575)
DNA (1575bp) protein (525aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VZ40_9CLOT rbh
signal transduction histidine kinase
SCNpilot_BF_INOC_scaffold_582_curated_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1589..2296)
DNA (708bp) protein (236aa)
DNA-binding response regulator MtrA n=1 Tax=Clostridium sp. MSTE9 RepID=J0N7X9_9CLOT
DNA-binding response regulator MtrA {ECO:0000313|EMBL:EJF40602.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
DNA-binding response regulator
SCNpilot_BF_INOC_scaffold_582_curated_3
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2311..2958)
DNA (648bp) protein (216aa)
Phosphate-specific transport system accessory protein PhoU n=2 Tax=Clostridium RepID=A7VZ22_9CLOT
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
phosphate transport system regulatory protein PhoU
SCNpilot_BF_INOC_scaffold_582_curated_4
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2981..3736)
DNA (756bp) protein (252aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) (EC:3.6.3.27) rbh
Phosphate ABC transporter, ATP-binding protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBM3_9CLOT rbh
SCNpilot_BF_INOC_scaffold_582_curated_5
unknown

Not on your lists

comp(3835..5226)
DNA (1392bp) protein (464aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_582_curated_6
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

Not on your lists

comp(5372..5872)
DNA (501bp) protein (167aa)
Hydrogenase 3 maturation peptidase Hycl, Aspartic peptidase, MEROPS family A31 id=3806596 bin=GWF2_Lentisphaerae_49_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hydrogenase maturation protease
Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
SCNpilot_BF_INOC_scaffold_582_curated_7
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(5977..6330)
DNA (354bp) protein (118aa)
4Fe-4S ferredoxin, iron-sulfur binding domain protein id=3806597 bin=GWF2_Lentisphaerae_49_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
4Fe-4S ferredoxin
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_BF_INOC_scaffold_582_curated_8
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(6331..7275)
DNA (945bp) protein (315aa)
NADH dehydrogenase subunit H id=3806598 bin=GWF2_Lentisphaerae_49_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good + rbh
respiratory-chain NADH dehydrogenase subunit 1 rbh
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_BF_INOC_scaffold_582_curated_9
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

Not on your lists

comp(7265..8485)
DNA (1221bp) protein (407aa)
Ech hydrogenase subunit E id=3806599 bin=GWF2_Lentisphaerae_49_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good + rbh
NADH dehydrogenase (ubiquinone) rbh
Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
SCNpilot_BF_INOC_scaffold_582_curated_10
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(8580..9035)
DNA (456bp) protein (152aa)
NADH dehydrogenase (Ubiquinone), 30 kDa subunit id=3806600 bin=GWF2_Lentisphaerae_49_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
NADH dehydrogenase (ubiquinone), 30 kDa subunit
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
SCNpilot_BF_INOC_scaffold_582_curated_11
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9032..9538)
DNA (507bp) protein (169aa)
Ech hydrogenase subunit C n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ALK4_PELPD
NADH-quinone oxidoreductase subunit B
Ech hydrogenase subunit C {ECO:0000313|EMBL:ABK98224.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
SCNpilot_BF_INOC_scaffold_582_curated_12
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(9557..9877)
DNA (321bp) protein (107aa)
NADH-quinone oxidoreductase subunit id=3806602 bin=GWF2_Lentisphaerae_49_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_BF_INOC_scaffold_582_curated_13
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(9945..10256)
DNA (312bp) protein (104aa)
NADH-ubiquinone oxidoreductase, chain 4L id=3806603 bin=GWF2_Lentisphaerae_49_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
NADH-ubiquinone oxidoreductase subunit 4L
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_BF_INOC_scaffold_582_curated_14
RIFOXYD1_FULL_Bdellovibrionales_44_7_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(10253..10780)
DNA (528bp) protein (176aa)
hypothetical protein id=7200998 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
Tax=RIFOXYD1_FULL_Bdellovibrionales_44_7_curated
SCNpilot_BF_INOC_scaffold_582_curated_15
RIFOXYD1_FULL_Bdellovibrionales_44_7_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(10808..11698)
DNA (891bp) protein (297aa)
Membrane bound hydrogenase subunit mbhH id=3806605 bin=GWF2_Lentisphaerae_49_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good + rbh
NADH dehydrogenase (quinone)
Tax=RIFOXYD1_FULL_Bdellovibrionales_44_7_curated
SCNpilot_BF_INOC_scaffold_582_curated_16
RIFOXYB2_FULL_WOR_1_48_7_curated, WOR-1, Bacteria

Not on your lists

comp(11668..12189)
DNA (522bp) protein (174aa)
NADH dehydrogenase (Quinone) n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ALK0_PELPD
NADH dehydrogenase (quinone)
Tax=RIFOXYB2_FULL_WOR_1_48_7_curated
SCNpilot_BF_INOC_scaffold_582_curated_17
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(12231..14099)
DNA (1869bp) protein (623aa)
NADH dehydrogenase (Quinone) id=3806606 bin=GWF2_Lentisphaerae_49_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good + rbh
NADH dehydrogenase (quinone) rbh
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_BF_INOC_scaffold_582_curated_18
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(14096..15523)
DNA (1428bp) protein (476aa)
NADH dehydrogenase (Quinone) n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ALJ8_PELPD rbh
NADH dehydrogenase (quinone) rbh
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
SCNpilot_BF_INOC_scaffold_582_curated_19
RBG_19FT_COMBO_Actinobacteria_36_27_curated, Actinobacteria, Bacteria

Not on your lists

comp(15636..16229)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KYB5_OSCVS
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_36_27_curated
SCNpilot_BF_INOC_scaffold_582_curated_20
unknown

Not on your lists

16865..17422
DNA (558bp) protein (186aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_582_curated_21
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18541..19677)
DNA (1137bp) protein (379aa)
carboxynorspermidine decarboxylase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2C1F7 rbh
carboxynorspermidine decarboxylase rbh
Carboxynorspermidine decarboxylase {ECO:0000313|EMBL:AHM58071.1}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
SCNpilot_BF_INOC_scaffold_582_curated_22
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19688..20887)
DNA (1200bp) protein (400aa)
Saccharopine dehydrogenase (NAD+, L-lysine forming) n=2 Tax=Paenibacillus polymyxa RepID=E3EFT9_PAEPS rbh
lyS2; hypothetical protein rbh
Saccharopine dehydrogenase {ECO:0000313|EMBL:ADO55811.1}; TaxID=886882 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa (strain SC2) (Bacillus polymyxa).;"
SCNpilot_BF_INOC_scaffold_582_curated_23
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

21096..21998
DNA (903bp) protein (301aa)
ABC transporter zinc-binding lipoprotein ZnuA n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0ISA7_9FIRM rbh
ABC transporter zinc-binding lipoprotein ZnuA {ECO:0000313|EMBL:EQB27397.1}; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
ABC-type metal ion transporter, periplasmic subunit rbh
SCNpilot_BF_INOC_scaffold_582_curated_24
GWD2_Clostridiales_32_59_curated, Clostridiales, Bacteria

Not on your lists

21999..22784
DNA (786bp) protein (262aa)
ATPase component of Mn/Zn ABC-type transporter id=1836042 bin=GWD2_Clostridiales_32_59 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Clostridiales_32_59 organism_group=Firmicute organism_desc=a65 rbh
ATPase component of Mn/Zn ABC-type transporter rbh
Tax=GWD2_Clostridiales_32_59_curated
SCNpilot_BF_INOC_scaffold_582_curated_25
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

22777..23613
DNA (837bp) protein (279aa)
ABC-type Mn2+/Zn2+ transport system, permease component n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0JT36_9FIRM rbh
ABC-type Mn2+/Zn2+ transport system, permease component {ECO:0000313|EMBL:EQB27399.1}; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
ABC-type Mn2+/Zn2+ transport system, permease component rbh
SCNpilot_BF_INOC_scaffold_582_curated_26
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23628..24029
DNA (402bp) protein (134aa)
Ferric uptake regulation protein Fur2 n=1 Tax=Clostridium sp. CAG:221 RepID=R6FZY4_9CLOT
Ferric uptake regulation protein Fur2 {ECO:0000313|EMBL:CDB14864.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
ferric uptake regulator, Fur family
SCNpilot_BF_INOC_scaffold_582_curated_27
unknown

Not on your lists

24055..24354
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_582_curated_28
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24401..25357
DNA (957bp) protein (319aa)
Metal binding protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2D563 rbh
Metal ABC transporter periplasmic protein {ECO:0000313|EMBL:CEQ24745.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
periplasmic solute binding protein rbh
SCNpilot_BF_INOC_scaffold_582_curated_29
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25358..26065
DNA (708bp) protein (236aa)
ABC-type Mn/Zn transport systems, ATPase component (EC:3.6.3.-)
ABC transporter n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0002481C00
ABC transporter {ECO:0000313|EMBL:KJF39013.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
SCNpilot_BF_INOC_scaffold_582_curated_30
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26058..26903
DNA (846bp) protein (282aa)
ABC transporter n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0002481C01 rbh
ABC 3 transport family protein {ECO:0000313|EMBL:CDA89737.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
ABC-type Mn2+/Zn2+ transport systems, permease components rbh
Displaying items 1-30 of 58 in total

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