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SCNpilot_BF_INOC_scaffold_530_curated

Search features with annotation key words

Displaying items 61-90 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_530_curated_61
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

comp(52636..52926)
DNA (291bp) protein (97aa)
ParB-like protein id=4235650 bin=GWF2_Clostridiales_38_85 species=Eubacterium siraeum genus=Eubacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
parB-like partition protein
Tax=GWF2_Clostridiales_38_85_curated
SCNpilot_BF_INOC_scaffold_530_curated_62
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

comp(53114..53359)
DNA (246bp) protein (82aa)
Bacterial regulatory helix-turn-helix s, AraC family protein id=3085945 bin=GWF2_Clostridiales_36_10 species=unknown genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
transcriptional regulator, AraC family
Tax=GWF2_Clostridiales_36_10_curated
SCNpilot_BF_INOC_scaffold_530_curated_63
Acholeplasma oculi, Acholeplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(53417..54331)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VT58_CLOSH rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CDR30784.1}; TaxID=35623 species="Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma.;" source="Acholeplasma oculi.;"
SCNpilot_BF_INOC_scaffold_530_curated_64
Acholeplasma oculi, Acholeplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(54375..55202)
DNA (828bp) protein (276aa)
Transcriptional regulator, AraC family rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CDR30783.1}; TaxID=35623 species="Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma.;" source="Acholeplasma oculi.;"
DNA-binding domain-containing protein, AraC-type id=3419323 bin=GWF2_Clostridiales_38_85 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212 rbh
SCNpilot_BF_INOC_scaffold_530_curated_65
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

comp(55321..55743)
DNA (423bp) protein (141aa)
GCN5-related N-acetyltransferase id=4419275 bin=GWF2_Clostridiales_38_85 species=Bacillus cellulosilyticus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
acetyltransferase
Tax=GWF2_Clostridiales_38_85_curated
SCNpilot_BF_INOC_scaffold_530_curated_66
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

comp(55746..56825)
DNA (1080bp) protein (360aa)
Acetyltransferase, GNAT family id=3717088 bin=GWF2_Clostridiales_38_85 species=Clostridium hathewayi genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212 rbh
GNAT family acetyltransferase
Tax=GWF2_Clostridiales_38_85_curated
SCNpilot_BF_INOC_scaffold_530_curated_67
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(56854..58197)
DNA (1344bp) protein (448aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KII6_CLOPH rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABX42438.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
SCNpilot_BF_INOC_scaffold_530_curated_68
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(58194..58352)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9KH37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:AKG36158.1}; TaxID=1333534 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus ATCC 35681.;"
shikimate kinase
SCNpilot_BF_INOC_scaffold_530_curated_69
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(58390..59187)
DNA (798bp) protein (266aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IK28_9FIRM rbh
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EQB29150.1}; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
methyltransferase type 11
SCNpilot_BF_INOC_scaffold_530_curated_70
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(59200..60066)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KV17_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:CCY68934.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_530_curated_71
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

comp(60063..60440)
DNA (378bp) protein (126aa)
Putative uncharacterized protein id=4236714 bin=GWF2_Clostridiales_38_85 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
hypothetical protein
Tax=GWF2_Clostridiales_38_85_curated
SCNpilot_BF_INOC_scaffold_530_curated_72
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(60430..61227)
DNA (798bp) protein (266aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GLS5_9FIRM
xylose isomerase
Xylose isomerase {ECO:0000313|EMBL:AHF06009.1}; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium metallireducens DSM 15288.;"
SCNpilot_BF_INOC_scaffold_530_curated_73
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(61240..61845)
DNA (606bp) protein (202aa)
acetyltransferase n=1 Tax=Butyrivibrio sp. AE3009 RepID=UPI0003B6259D
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:CDE19544.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
N-acetyltransferase GCN5
SCNpilot_BF_INOC_scaffold_530_curated_74
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(61886..62143)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7G159_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE19702.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
SCNpilot_BF_INOC_scaffold_530_curated_75
unknown

Not on your lists

63066..63500
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_530_curated_76
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(64192..64563)
DNA (372bp) protein (124aa)
Transcriptional regulator, HxlR family n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R539_CLOSW
HxlR family transcriptional regulator
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ADL05146.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
SCNpilot_BF_INOC_scaffold_530_curated_77
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

66048..67280
DNA (1233bp) protein (411aa)
Copper-translocating P-type ATPase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R538_CLOSW rbh
copper-translocating P-type ATPase rbh
Copper-translocating P-type ATPase {ECO:0000313|EMBL:ADL05145.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
SCNpilot_BF_INOC_scaffold_530_curated_78
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

67283..67996
DNA (714bp) protein (238aa)
Putative uncharacterized protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R537_CLOSW rbh
Uncharacterized protein {ECO:0000313|EMBL:KEZ86971.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_530_curated_79
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

68110..68319
DNA (210bp) protein (70aa)
Copper ion binding protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R536_CLOSW
Copper ion binding protein {ECO:0000313|EMBL:EXG87477.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
copper ion binding protein
SCNpilot_BF_INOC_scaffold_530_curated_80
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

68378..69082
DNA (705bp) protein (235aa)
transcriptional regulator n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037CDBAC rbh
winged helix family two component transcriptional regulator rbh
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADL05142.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
SCNpilot_BF_INOC_scaffold_530_curated_81
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

69084..70478
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R534_CLOSW rbh
integral membrane sensor signal transduction histidine kinase rbh
SCNpilot_BF_INOC_scaffold_530_curated_82
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(70648..71514)
DNA (867bp) protein (289aa)
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K464_9FIRM rbh
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control rbh
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control {ECO:0000313|EMBL:CBK98307.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
SCNpilot_BF_INOC_scaffold_530_curated_83
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(71511..72632)
DNA (1122bp) protein (374aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7) rbh
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H3H3_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:CDE34219.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
SCNpilot_BF_INOC_scaffold_530_curated_84
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(73011..74789)
DNA (1779bp) protein (593aa)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
L-fucose isomerase (EC:5.3.1.25) rbh
L-fucose isomerase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDQ6_9CLOT rbh
SCNpilot_BF_INOC_scaffold_530_curated_85
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

74993..75847
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K575_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43322.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_530_curated_86
unknown

Not on your lists

comp(75947..76276)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B61AA3
SCNpilot_BF_INOC_scaffold_530_curated_87
Coprococcus eutactus CAG:665, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

77426..77635
DNA (210bp) protein (70aa)
Conserved domain protein n=3 Tax=Clostridium botulinum RepID=A7FXA7_CLOB1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCZ93795.1}; TaxID=1263071 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus eutactus CAG:665.;"
SCNpilot_BF_INOC_scaffold_530_curated_88
Lachnospiraceae bacterium oral taxon 082, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

77632..77832
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium oral taxon 082 str. F0431 RepID=H1LX51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO51315.1}; TaxID=861454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium oral taxon 082 str. F0431.;"
SCNpilot_BF_INOC_scaffold_530_curated_89
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(77863..78594)
DNA (732bp) protein (244aa)
NERD domain-containing protein n=1 Tax=Sporolactobacillus inulinus RepID=UPI000255BE23
Uncharacterized protein {ECO:0000313|EMBL:CDB42126.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
NERD domain-containing protein
SCNpilot_BF_INOC_scaffold_530_curated_90
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(78624..79142)
DNA (519bp) protein (173aa)
NUDIX hydrolase n=3 Tax=Desulfitobacterium hafniense RepID=B8FYG3_DESHD
NUDIX hydrolase
Hydrolase, NUDIX family {ECO:0000313|EMBL:EHL09254.1}; TaxID=537010 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense DP7.;"
Displaying items 61-90 of 100 in total

View Taxonomy