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SCNpilot_BF_INOC_scaffold_530_curated

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_530_curated_1
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

3..368
DNA (366bp) protein (122aa)
Type II secretion system protein E n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TVD3_9FIRM
Type II secretion system protein E {ECO:0000313|EMBL:CDC77413.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily
SCNpilot_BF_INOC_scaffold_530_curated_2
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

365..811
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6UBD1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC77411.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_530_curated_3
Caldicellulosiruptor obsidiansis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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941..2326
DNA (1386bp) protein (462aa)
Pyruvate carboxyltransferase n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9TIF9_CALOO rbh
pyruvate carboxyltransferase rbh
Pyruvate carboxyltransferase {ECO:0000313|EMBL:ADL41791.1}; TaxID=608506 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47).;"
SCNpilot_BF_INOC_scaffold_530_curated_4
unknown

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comp(3521..3715)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_530_curated_5
BJP_IG2102_Acholeplasmatales_34_18, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

3848..4138
DNA (291bp) protein (97aa)
Tax=BJP_IG2102_Acholeplasmatales_34_18
SCNpilot_BF_INOC_scaffold_530_curated_6
Megasphaera sp. BV3C16-1, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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4086..4421
DNA (336bp) protein (112aa)
Recombinase n=1 Tax=Megasphaera sp. BV3C16-1 RepID=U7URU4_9FIRM
Recombinase {ECO:0000313|EMBL:ERT62026.1}; TaxID=1111454 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. BV3C16-1.;"
recombinase
SCNpilot_BF_INOC_scaffold_530_curated_7
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

4995..5366
DNA (372bp) protein (124aa)
adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase id=3085961 bin=GWF2_Clostridiales_36_10 species=Clostridium phytofermentans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
Tax=GWF2_Clostridiales_36_10_curated
SCNpilot_BF_INOC_scaffold_530_curated_8
Desulfosporosinus sp. HMP52, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5816..6346
DNA (531bp) protein (177aa)
Putative transposase for insertion sequence element n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KP75_OSCVS
Transposase {ECO:0000313|EMBL:KGK86665.1}; Flags: Fragment;; TaxID=1487923 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. HMP52.;"
putative transposase for insertion sequence element
SCNpilot_BF_INOC_scaffold_530_curated_9
Prevotella nigrescens, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6618..7052
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Clostridium tyrobutyricum RepID=UPI0002DF8062
Uncharacterized protein {ECO:0000313|EMBL:ETD26232.1}; TaxID=1073366 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella nigrescens CC14M.;"
coenzyme F420-reducing hydrogenase subunit beta
SCNpilot_BF_INOC_scaffold_530_curated_10
unknown

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7030..7374
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E716
SCNpilot_BF_INOC_scaffold_530_curated_11
unknown

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7371..7550
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_530_curated_12
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7687..8352
DNA (666bp) protein (222aa)
4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:EMS69223.1}; EC=2.7.8.- {ECO:0000313|EMBL:EMS69223.1};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
4'-phosphopantetheinyl transferase n=1 Tax=Clostridium termitidis CT1112 RepID=S0FL36_9CLOT
hypothetical protein
SCNpilot_BF_INOC_scaffold_530_curated_13
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8671..9771
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Clostridium tyrobutyricum RepID=UPI0002DF8062 rbh
4Fe-4S ferredoxin
4Fe-4S ferredoxin, iron-sulfur binding domain protein {ECO:0000313|EMBL:ABR46447.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_BF_INOC_scaffold_530_curated_14
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9829..10881
DNA (1053bp) protein (351aa)
Putative uncharacterized protein id=4173991 bin=GWA2_Bacteroidetes_A19_40_15 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Bacteroidetes_A19_40_15 organism_group=Bacteroidetes
hypothetical protein
Tax=GWA2_Bacteroidetes_40_15_curated
SCNpilot_BF_INOC_scaffold_530_curated_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10947..11276)
DNA (330bp) protein (110aa)
Helix-turn-helix family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DJU6_CLODI
Helix-turn-helix family protein {ECO:0000313|EMBL:EQF26820.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
regulatory protein
SCNpilot_BF_INOC_scaffold_530_curated_16
unknown

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11471..11785
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_530_curated_17
unknown

Not on your lists

11916..12284
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_530_curated_18
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12298..13527
DNA (1230bp) protein (410aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
S-adenosylmethionine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHD8_9CLOT
S-adenosylmethionine synthetase
SCNpilot_BF_INOC_scaffold_530_curated_19
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13506..14054
DNA (549bp) protein (183aa)
Acetyltransferase, including N-acetylase of ribosomal protein n=1 Tax=Bacillus cereus Rock3-44 RepID=C2WDN0_BACCE
Acetyltransferase, including N-acetylase of ribosomal protein {ECO:0000313|EMBL:EEL48760.1}; TaxID=526986 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus Rock3-44.;"
RimL2; acetyltransferase
SCNpilot_BF_INOC_scaffold_530_curated_20
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14090..16000
DNA (1911bp) protein (637aa)
1,3--beta-D-glucan 3-glucanohydrolase n=1 Tax=Cohnella laeviribosi RepID=UPI0003605F27
beta-glucanase/beta-glucan synthetase
Beta-glucanase/beta-glucan synthetase {ECO:0000313|EMBL:AGA57343.1}; Flags: Precursor;; TaxID=717605 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermobacillus.;" source="Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4).;"
SCNpilot_BF_INOC_scaffold_530_curated_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16033..17133
DNA (1101bp) protein (367aa)
WfaX n=2 Tax=Clostridium butyricum RepID=B1QTB2_CLOBU
WfaX {ECO:0000313|EMBL:EEP55753.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
Polysaccharide pyruvyl transferase.
SCNpilot_BF_INOC_scaffold_530_curated_22
Paenibacillus sp. FSL R7-0331, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17163..19037
DNA (1875bp) protein (625aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI00036E670A rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ51315.1}; TaxID=1536773 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-0331.;"
SCNpilot_BF_INOC_scaffold_530_curated_23
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19038..20858
DNA (1821bp) protein (607aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI000363A78F rbh
Uncharacterized protein {ECO:0000313|EMBL:CDD04276.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
subtilin ABC transporter
SCNpilot_BF_INOC_scaffold_530_curated_24
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20881..21834
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BNL1100 RepID=H2JAT6_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY67383.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
SCNpilot_BF_INOC_scaffold_530_curated_25
unknown

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21838..22767
DNA (930bp) protein (310aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_530_curated_26
unknown

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22843..23013
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_530_curated_27
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23373..24470
DNA (1098bp) protein (366aa)
3-dehydroquinate synthase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2FAE2 rbh
3,7-dideoxy-D-threo-hepto-2, 6-diulosonate synthase {ECO:0000313|EMBL:GAE86733.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
3-dehydroquinate synthase rbh
SCNpilot_BF_INOC_scaffold_530_curated_28
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24494..25240
DNA (747bp) protein (249aa)
deoxyribose-phosphate aldolase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2FAEC
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase {ECO:0000313|EMBL:GAE86718.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
SCNpilot_BF_INOC_scaffold_530_curated_29
unknown

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25275..26282
DNA (1008bp) protein (336aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_530_curated_30
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26657..28102
DNA (1446bp) protein (482aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Nicotinate phosphoribosyltransferase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LX16_CLOCD rbh
putative nicotinate phosphoribosyltransferase rbh
Displaying items 1-30 of 100 in total

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