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SCNpilot_BF_INOC_scaffold_2266_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2266_curated_1
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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comp(3..1403)
DNA (1401bp) protein (467aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
dihydroxy-acid dehydratase (EC:4.2.1.9) rbh
Dihydroxy-acid dehydratase n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BBK8_9FIRM rbh
SCNpilot_BF_INOC_scaffold_2266_curated_2
unknown

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comp(1393..1869)
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_curated_3
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2117..2722)
DNA (606bp) protein (202aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
lysS; Lysyl-tRNA synthetase, class II (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8I5_9CLOT
SCNpilot_BF_INOC_scaffold_2266_curated_4
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3603..4076)
DNA (474bp) protein (158aa)
Transcription elongation factor GreA n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U6K9_ETHHY
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
SCNpilot_BF_INOC_scaffold_2266_curated_5
unknown

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comp(4171..4971)
DNA (801bp) protein (267aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_curated_6
Paenibacillus sp. P1XP2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(5197..6720)
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI000366B039
Bacterial extracellular solute-binding protein {ECO:0000313|EMBL:KHF32823.1}; TaxID=1472719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. P1XP2.;"
extracellular solute-binding protein
SCNpilot_BF_INOC_scaffold_2266_curated_7
unknown

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comp(6845..8503)
DNA (1659bp) protein (553aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_curated_8
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(8500..9018)
DNA (519bp) protein (173aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VYC2_THESW
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGB19666.1}; TaxID=698948 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium thermosaccharolyticum M0795.;"
SCNpilot_BF_INOC_scaffold_2266_curated_9
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9251..10264
DNA (1014bp) protein (338aa)
Cell shape determining protein, MreB/Mrl family n=2 Tax=Clostridium RepID=A7VRQ0_9CLOT rbh
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:EDO61730.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
mreB; Rod shape-determining protein MreB rbh
SCNpilot_BF_INOC_scaffold_2266_curated_10
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10325..11191
DNA (867bp) protein (289aa)
Cell shape-determining protein MreC n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGC2_9FIRM
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
rod shape-determining protein MreC
SCNpilot_BF_INOC_scaffold_2266_curated_11
unknown

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comp(11083..11433)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_curated_12
unknown

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comp(11481..11579)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_curated_13
unknown

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comp(13006..13590)
DNA (585bp) protein (195aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_curated_14
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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13740..14483
DNA (744bp) protein (248aa)
Site-determining protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ARP7_9CLOT
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
septum site-determining protein MinD
SCNpilot_BF_INOC_scaffold_2266_curated_15
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14861..15265
DNA (405bp) protein (135aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
mgsA; Methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNQ4_9FIRM
SCNpilot_BF_INOC_scaffold_2266_curated_16
unknown

Not on your lists

15399..15845
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_curated_17
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

Not on your lists


16264..16641
DNA (378bp) protein (126aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=2 Tax=root RepID=R7BE20_9FIRM
SCNpilot_BF_INOC_scaffold_2266_curated_18
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16684..18534
DNA (1851bp) protein (617aa)
aspS1; Aspartate-tRNA ligase (EC:6.1.1.12) rbh
Aspartate--tRNA ligase n=1 Tax=Clostridium sp. CAG:413 RepID=R6PKP6_9CLOT rbh
Aspartate--tRNA ligase 2 {ECO:0000313|EMBL:CDC10347.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
SCNpilot_BF_INOC_scaffold_2266_curated_19
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18759..19397)
DNA (639bp) protein (213aa)
Predicted permeases n=1 Tax=Clostridium sp. CAG:964 RepID=R6UBR8_9CLOT
Predicted permeases {ECO:0000313|EMBL:CDC77546.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
putative permease
Displaying 19 items

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