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SCNpilot_BF_INOC_scaffold_3245_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_3245_curated_1
GWC1_WS6_36_11, WS6, Bacteria

Not on your lists

3..188
DNA (186bp) protein (62aa)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium sp. BNL1100 RepID=H2JE02_9CLOT
tRNA-specific 2-thiouridylase MnmA {ECO:0000313|EMBL:KKP91549.1}; TaxID=1619090 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_36_11.;"
tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
SCNpilot_BF_INOC_scaffold_3245_curated_2
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

240..719
DNA (480bp) protein (160aa)
HD family phosphohydrolase n=1 Tax=Clostridium beijerinckii RepID=UPI0002E985E1
Metal dependent phosphohydrolase {ECO:0000313|EMBL:AJG99779.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
HD-GYP domain-containing protein
SCNpilot_BF_INOC_scaffold_3245_curated_3
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(892..1275)
DNA (384bp) protein (128aa)
Dockerin type I repeat protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VEE9_9CLOT
Dockerin type I repeat protein {ECO:0000313|EMBL:EDO58152.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
Beta-N-acetylglucosaminidase
SCNpilot_BF_INOC_scaffold_3245_curated_4
unknown

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1769..1978
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3245_curated_5
unknown

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2302..2445
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3245_curated_6
unknown

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2593..2850
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3245_curated_7
unknown

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3037..3663
DNA (627bp) protein (209aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3245_curated_8
unknown

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comp(3759..4025)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3245_curated_9
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4165..4488)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FMT4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMS70419.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_3245_curated_10
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

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comp(4611..6143)
DNA (1533bp) protein (511aa)
id=2965319 bin=GWF2_Syntrophobacterales_56_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
SCNpilot_BF_INOC_scaffold_3245_curated_11
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(6290..6916)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Paenibacillus fonticola RepID=UPI000381B7BF
G-D-S-L family lipolytic protein {ECO:0000313|EMBL:ETT49226.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
GDSL family lipase
SCNpilot_BF_INOC_scaffold_3245_curated_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6938..7174)
DNA (237bp) protein (79aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Glutamine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IUL6_9FIRM
glutaminyl-tRNA synthetase
SCNpilot_BF_INOC_scaffold_3245_curated_13
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7123..8547)
DNA (1425bp) protein (475aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18) rbh
Glutamine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IUL6_9FIRM rbh
SCNpilot_BF_INOC_scaffold_3245_curated_14
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8550..8870)
DNA (321bp) protein (107aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Glutamate--tRNA ligase n=2 Tax=root RepID=R5MF11_9FIRM
glutamyl-tRNA synthetase
SCNpilot_BF_INOC_scaffold_3245_curated_15
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9227..10189)
DNA (963bp) protein (321aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
glutamyl-tRNA synthetase, bacterial family (EC:6.1.1.17) rbh
Glutamate--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YRH7_9FIRM rbh
SCNpilot_BF_INOC_scaffold_3245_curated_16
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10304..10843)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6RGH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC33537.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_3245_curated_17
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10939..11928
DNA (990bp) protein (330aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
tRNA-dihydrouridine synthase n=2 Tax=Clostridium RepID=A7VYP6_9CLOT rbh
nifR3 family TIM-barrel protein rbh
SCNpilot_BF_INOC_scaffold_3245_curated_18
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

comp(12038..13747)
DNA (1710bp) protein (570aa)
Histidine kinase id=3085943 bin=GWF2_Clostridiales_36_10 species=Clostridium sp. Maddingley MBC34-26 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute rbh
histidine kinase
Tax=GWF2_Clostridiales_36_10_curated
SCNpilot_BF_INOC_scaffold_3245_curated_19
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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comp(13778..15391)
DNA (1614bp) protein (538aa)
Histidine kinase id=3085943 bin=GWF2_Clostridiales_36_10 species=Clostridium sp. Maddingley MBC34-26 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
integral membrane sensor signal transduction histidine kinase
Tax=GWF2_Clostridiales_36_10_curated
Displaying 19 items

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