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SCNpilot_BF_INOC_scaffold_2629_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2629_curated_1
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..420)
DNA (420bp) protein (140aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
rsgA; putative ribosome biogenesis GTPase RsgA (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Clostridium sp. CAG:352 RepID=R6QUA6_9CLOT
SCNpilot_BF_INOC_scaffold_2629_curated_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(433..2415)
DNA (1983bp) protein (661aa)
Putative serine/threonine-protein kinase PrkC n=1 Tax=Clostridium sp. MSTE9 RepID=J1H3C0_9CLOT rbh
Putative serine/threonine-protein kinase PrkC {ECO:0000313|EMBL:EJF40015.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
serine/threonine protein kinase with PASTA sensor(s) rbh
SCNpilot_BF_INOC_scaffold_2629_curated_3
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2498..3229)
DNA (732bp) protein (244aa)
Protein phosphatase 2C n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HZI7_9FIRM
Protein phosphatase 2C {ECO:0000313|EMBL:CDB42465.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
protein serine/threonine phosphatase
SCNpilot_BF_INOC_scaffold_2629_curated_4
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3293..4363)
DNA (1071bp) protein (357aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
rlmN; putative dual-specificity RNA methyltransferase RlmN (EC:2.1.1.-) rbh
Probable dual-specificity RNA methyltransferase RlmN n=2 Tax=root RepID=R5MY15_9FIRM rbh
SCNpilot_BF_INOC_scaffold_2629_curated_5
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4317..5639)
DNA (1323bp) protein (441aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ribosomal RNA small subunit methyltransferase RsmB (EC:2.1.1.-) rbh
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Clostridium sp. MSTE9 RepID=J0MZJ0_9CLOT rbh
SCNpilot_BF_INOC_scaffold_2629_curated_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5639..6325)
DNA (687bp) protein (229aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JEK7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76014.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
peptidase membrane zinc metallopeptidase putative
SCNpilot_BF_INOC_scaffold_2629_curated_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6342..7268)
DNA (927bp) protein (309aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
fmt; Methionyl-tRNA formyltransferase (EC:2.1.2.9) rbh
Methionyl-tRNA formyltransferase n=1 Tax=Clostridium leptum CAG:27 RepID=R6NFQ0_9CLOT rbh
SCNpilot_BF_INOC_scaffold_2629_curated_8
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7380..7673)
DNA (294bp) protein (98aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Peptide deformylase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A716_9CLOT
peptide deformylase
SCNpilot_BF_INOC_scaffold_2629_curated_9
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7697..8224)
DNA (528bp) protein (176aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
primosomal protein N' (EC:3.6.1.-)
Primosomal protein N n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IAJ8_9FIRM
Displaying 9 items

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