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OR_08142018_10m_0_1um_scaffold_260

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_260_1
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..847)
DNA (846bp) protein (282aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
polynucleotide phosphorylase/polyadenylase n=1 Tax=Azoarcus toluclasticus RepID=UPI00035F692D
polyribonucleotide nucleotidyltransferase
OR_08142018_10m_0_1um_scaffold_260_2
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(932..1186)
DNA (255bp) protein (85aa)
30S ribosomal protein S15 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WU19_PSEUU
30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
OR_08142018_10m_0_1um_scaffold_260_3
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1383..1556)
DNA (174bp) protein (58aa)
Cyclic nucleotide-binding protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D794_9GAMM
cyclic nucleotide-binding protein
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:AHF01165.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_260_4
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1507..1809)
DNA (303bp) protein (101aa)
cyclic nucleotide-binding protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003678D6E
Crp/Fnr family transcriptional regulator
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ACL73761.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
OR_08142018_10m_0_1um_scaffold_260_5
Acinetobacter gerneri, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2059..2970)
DNA (912bp) protein (304aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1120926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter gerneri DSM 14967 = CIP 107464.;"
tRNA pseudouridine synthase B n=1 Tax=Acinetobacter gerneri DSM 14967 = CIP 107464 RepID=N8ZL49_9GAMM
tRNA pseudouridine synthase B
OR_08142018_10m_0_1um_scaffold_260_6
Endozoicomonas elysicola, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2974..3369)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Endozoicomonas elysicola RepID=UPI00036E128D
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=305900 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas elysicola.;"
OR_08142018_10m_0_1um_scaffold_260_7
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3618..6104)
DNA (2487bp) protein (829aa)
Translation initiation factor IF-2 n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=IF2_THICR
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
translation initiation factor IF-2
OR_08142018_10m_0_1um_scaffold_260_8
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6125..7609)
DNA (1485bp) protein (495aa)
NusA antitermination factor n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31GK6_THICR
NusA antitermination factor
Tax=CG_Thiomicrospira_01
OR_08142018_10m_0_1um_scaffold_260_9
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7621..8085)
DNA (465bp) protein (155aa)
Ribosome maturation factor RimP n=1 Tax=Pseudomonas fluorescens SS101 RepID=I4KC04_PSEFL
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens SS101.;"
OR_08142018_10m_0_1um_scaffold_260_10
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8201..9550)
DNA (1350bp) protein (450aa)
carboxyl-terminal protease (EC:3.4.21.102)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00035C5B13
Peptidase S41 {ECO:0000313|EMBL:KDN96645.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
OR_08142018_10m_0_1um_scaffold_260_11
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9763..10083
DNA (321bp) protein (107aa)
ArsR family transcriptional regulator n=1 Tax=Thiomicrospira arctica RepID=UPI000376E2AB
ArsR family transcriptional regulator {ECO:0000313|EMBL:KDN96644.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
ArsR family transcriptional regulator
OR_08142018_10m_0_1um_scaffold_260_12
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10090..11385
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000367A537
lytic murein transglycosylase
Lytic murein transglycosylase {ECO:0000313|EMBL:AEG31939.1}; Flags: Precursor;; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
OR_08142018_10m_0_1um_scaffold_260_13
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

11426..13090
DNA (1665bp) protein (555aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UAN9_9CYAN
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:EGK90255.1}; TaxID=756067 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vaginatus FGP-2.;"
response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
OR_08142018_10m_0_1um_scaffold_260_14
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13170..13673
DNA (504bp) protein (168aa)
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI0003679B7C
RNA pyrophosphohydrolase
OR_08142018_10m_0_1um_scaffold_260_15
unknown

Not on your lists

comp(13636..13743)
DNA (108bp) protein (36aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_260_16
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13745..14284
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00036DFCA1
hypothetical protein
Tax=CG_Thiomicrospira_01
OR_08142018_10m_0_1um_scaffold_260_17
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14261..15634)
DNA (1374bp) protein (458aa)
MATE efflux family protein n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DCI7_THICA
MATE efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:AEG31573.1}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
OR_08142018_10m_0_1um_scaffold_260_18
unknown

Not on your lists

comp(15624..15926)
DNA (303bp) protein (101aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_260_19
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15913..17046)
DNA (1134bp) protein (378aa)
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1DUU9_9GAMM
Tax=RBG_16_Gammaproteobacteria_51_14_curated
OR_08142018_10m_0_1um_scaffold_260_20
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17046..18437)
DNA (1392bp) protein (464aa)
Replicative DNA helicase n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SVF2_9GAMM
replicative DNA helicase
Tax=RBG_16_Gammaproteobacteria_57_12_curated
OR_08142018_10m_0_1um_scaffold_260_21
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18597..19043)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DAU5_9GAMM
rplI; 50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_260_22
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19059..19961)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI0003814AB8
hypothetical protein
Tax=CG_Thiomicrospira_01
OR_08142018_10m_0_1um_scaffold_260_23
Reinekea blandensis, Reinekea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19990..20214)
DNA (225bp) protein (75aa)
30S ribosomal protein S18 n=1 Tax=Reinekea blandensis MED297 RepID=A4BI22_9GAMM
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=314283 species="Bacteria; Proteobacteria; Gammaproteobacteria; Reinekea.;" source="Reinekea blandensis MED297.;"
OR_08142018_10m_0_1um_scaffold_260_24

Not on your lists


comp(20220..20597)
DNA (378bp) protein (126aa)
30S ribosomal protein S6 n=1 Tax=Spongiibacter tropicus RepID=UPI0003B574F9
Uncharacterized protein {ECO:0000313|EMBL:KKO00058.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
30S ribosomal protein S6
OR_08142018_10m_0_1um_scaffold_260_25
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20802..20927
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=2 Tax=Thioalkalimicrobium RepID=F6DCY8_THICA
50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_260_26
Methylophaga aminisulfidivorans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21176..23281)
DNA (2106bp) protein (702aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00037A72E9
Putative hydrolase {ECO:0000313|EMBL:EGL53424.1}; TaxID=1026882 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga aminisulfidivorans MP.;"
comA; putative DNA uptake/competence protein
OR_08142018_10m_0_1um_scaffold_260_27
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23259..24905)
DNA (1647bp) protein (549aa)
ATP-dependent protease, putative n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D7J2_9GAMM
ATP-dependent protease
ATP-dependent protease {ECO:0000313|EMBL:AHF00955.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_260_28
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24991..25089
DNA (99bp) protein (33aa)
UPF0234 protein ThiaeDRAFT_0720 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D9E8_9GAMM
nucleotide-binding protein
UPF0234 protein Thicy_0274 {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
OR_08142018_10m_0_1um_scaffold_260_29
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25607..26485
DNA (879bp) protein (293aa)
NAD(+) kinase (EC:2.7.1.23)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00036CFEC2
Tax=CG_Thiomicrospira_01
OR_08142018_10m_0_1um_scaffold_260_30
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26641..28317
DNA (1677bp) protein (559aa)
DNA repair protein RecN n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HB1_THICR
DNA repair protein RecN
Tax=CG_Thiomicrospira_01
Displaying items 1-30 of 39 in total

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