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RTP_02272018_0_2um_scaffold_118

Search features with annotation key words

Displaying items 61-89 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_118_61
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(65894..66028)
DNA (135bp) protein (45aa)
50S ribosomal protein L34
50S ribosomal protein L34P; K02914 large subunit ribosomal protein L34 id=12496086 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_118_62
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66225..67598
DNA (1374bp) protein (458aa)
Chromosomal replication initiator protein DnaA id=1307777 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
chromosome replication initiator DnaA
Tax=RBG_16_Gallionellales_57_15_curated
RTP_02272018_0_2um_scaffold_118_63
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67778..68881
DNA (1104bp) protein (368aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI000370F794
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_118_64
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68963..71458
DNA (2496bp) protein (832aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Thiobacillus thioparus RepID=UPI0003613858
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_65
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71498..72877)
DNA (1380bp) protein (460aa)
Putative Fic (Filamentation induced by cAMP) protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CPR1_THIA3
putative Fic (filamentation induced by cAMP) protein
Putative Fic (Filamentation induced by cAMP) protein {ECO:0000313|EMBL:CAZ87991.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
RTP_02272018_0_2um_scaffold_118_66
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73349..73705)
DNA (357bp) protein (119aa)
Putative uncharacterized protein id=1307781 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_118_67
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73717..76281)
DNA (2565bp) protein (855aa)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase I n=1 Tax=Thiobacillus thioparus RepID=UPI000361E7BC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_118_68
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76291..76791)
DNA (501bp) protein (167aa)
Protein smg homolog id=1307783 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Smg protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_69
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76742..77704)
DNA (963bp) protein (321aa)
DNA-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F8EB0
SMF protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_118_70
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77803..79011)
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361A737
peptidoglycan-binding LysM-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_71
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79202..79735
DNA (534bp) protein (178aa)
peptide deformylase (EC:3.5.1.88)
peptide deformylase n=1 Tax=Thiobacillus denitrificans RepID=UPI000382D3A1
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_72
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79748..80668
DNA (921bp) protein (307aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase id=1307787 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_73
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80932..82188
DNA (1257bp) protein (419aa)
16S rRNA methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003632888
Fmu, rRNA SAM-dependent methyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_118_74
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82271..82897
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035F181C
proline rich signal peptide protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_118_75
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82897..85029
DNA (2133bp) protein (711aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
histidine kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003738914
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_76
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85026..86300
DNA (1275bp) protein (425aa)
Two Component Transcriptional Regulator, Fis family id=1356551 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Fis family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_77
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86401..87774
DNA (1374bp) protein (458aa)
trkA, sapG; potassium transporter peripheral membrane component; K03499 trk system potassium uptake protein TrkA id=12496063 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
trkA; potassium transporter peripheral membrane component
Trk system potassium uptake protein TrkA {ECO:0000313|EMBL:AAZ95973.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_118_78
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88187..89644
DNA (1458bp) protein (486aa)
Trk system potassium uptake protein id=1354753 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
trk system potassium uptake membrane protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_79
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89788..90123
DNA (336bp) protein (112aa)
Putative uncharacterized protein id=1354754 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
TPR repeat-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_118_80
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90142..90417
DNA (276bp) protein (92aa)
hypothetical protein id=12494846 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Probable Fe(2+)-trafficking protein {ECO:0000255|HAMAP-Rule:MF_00686}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_118_81
unknown

Not on your lists

comp(90396..90521)
DNA (126bp) protein (42aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_118_82
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(90569..91270)
DNA (702bp) protein (234aa)
phosphate uptake regulator, PhoU; K02039 phosphate transport system protein id=12496059 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
phosphate uptake regulator, PhoU
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_83
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91341..91754)
DNA (414bp) protein (138aa)
Putative uncharacterized protein id=1354757 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_84
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91751..92827)
DNA (1077bp) protein (359aa)
thiamine monophosphate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000381CA5F
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_85
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92824..93711)
DNA (888bp) protein (296aa)
ATPase AAA n=1 Tax=Thiobacillus denitrificans RepID=UPI0003697500
ATPase
ATPase {ECO:0000313|EMBL:AAZ95981.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_118_86
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93692..94918)
DNA (1227bp) protein (409aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase (EC:2.3.1.35)
N-acetylglutamate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036EFAF3
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_118_87
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(94979..95218)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003632F27
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_118_88
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95356..95694)
DNA (339bp) protein (113aa)
type 1 pili tip component n=1 Tax=Thiobacillus denitrificans RepID=UPI00037ADFDD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ95984.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_118_89
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95758..96360)
DNA (603bp) protein (201aa)
methylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A45C8
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 61-89 of 89 in total

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