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RTP_02272018_0_2um_scaffold_118

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_118_1
Pseudomonas sp. 10-1B, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..221
DNA (219bp) protein (73aa)
Uncharacterized protein HI1420 n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YIB7_9DELT
Addiction module antitoxin {ECO:0000313|EMBL:KIY38517.1}; TaxID=1546029 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 10-1B.;"
transcriptional regulator protein
RTP_02272018_0_2um_scaffold_118_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(910..1101)
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Marinobacterium rhizophilum RepID=UPI00035D1BB5
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_118_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1277..2050)
DNA (774bp) protein (258aa)
demethylmenaquinone methyltransferase (EC:2.1.1.-)
Methyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFA3_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_118_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2047..2805)
DNA (759bp) protein (253aa)
glycosyl transferase family protein id=12493264 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
glycosyl transferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_118_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2816..3655)
DNA (840bp) protein (280aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFA1_THIDA
phospholipid/glycerol acyltransferase
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:AAZ98713.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_118_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3652..4719)
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI000374E589
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98715.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_118_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4716..6041)
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00035C948B
oxidoreductase, FAD-binding
Oxidoreductase, FAD-binding, putative {ECO:0000313|EMBL:AAZ98716.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_118_8

Not on your lists

6318..7415
DNA (1098bp) protein (366aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=uncultured bacterium RepID=K2DZ54_9BACT
rmlB; dTDP-glucose 4,6-dehydratase
RTP_02272018_0_2um_scaffold_118_9
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7412..8314
DNA (903bp) protein (301aa)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:ESS15160.1}; EC=1.1.1.133 {ECO:0000313|EMBL:ESS15160.1};; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V5AHW9_9PROT
RTP_02272018_0_2um_scaffold_118_10
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8311..9195
DNA (885bp) protein (295aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q124Y0_POLSJ
RTP_02272018_0_2um_scaffold_118_11
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9192..9737
DNA (546bp) protein (182aa)
rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:CAD84589.1}; EC=5.1.3.13 {ECO:0000313|EMBL:CAD84589.1};; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Pseudomonas tolaasii RepID=UPI00036734E0
RTP_02272018_0_2um_scaffold_118_12
R_Pseudomonas_63_210, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9946..10173
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-602-C20 RepID=UPI000382588C
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated
RTP_02272018_0_2um_scaffold_118_13
R_Pseudomonas_63_210, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10166..10441
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-602-C20 RepID=UPI00035CE40C
RelE/StbE family addiction module toxin
Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated
RTP_02272018_0_2um_scaffold_118_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10771..15255
DNA (4485bp) protein (1495aa)
gltB; glutamate synthase subunit alpha (EC:1.4.1.13)
glutamate synthase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI00037776CE
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_15
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15267..15488
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Halomonas sp. A3H3 RepID=T2LAR3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDG54163.1}; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_118_16
Chamaesiphon minutus, Chamaesiphon, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

15485..15772
DNA (288bp) protein (96aa)
Plasmid stabilization system protein n=1 Tax=Chamaesiphon minutus PCC 6605 RepID=K9UD86_9CHRO
plasmid stabilization system protein
Plasmid stabilization system protein {ECO:0000313|EMBL:AFY92613.1}; TaxID=1173020 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Chamaesiphon.;" source="Chamaesiphon minutus PCC 6605.;"
RTP_02272018_0_2um_scaffold_118_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15796..17223
DNA (1428bp) protein (476aa)
gltD; glutamate synthase subunit beta (EC:1.4.1.13)
glutamate synthase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI00035FEFC7
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_118_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17307..18746
DNA (1440bp) protein (480aa)
signal transduction histidine kinase (EC:2.7.3.-)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000366F092
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_118_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18743..19210
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003633130
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19207..20559
DNA (1353bp) protein (451aa)
response regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00036BFD4F
Fis family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_118_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20721..20888
DNA (168bp) protein (56aa)
UPF0391 membrane protein Tbd_2772 id=1343555 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21207..21695
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C1A3F
transport-associated
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_118_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21767..22108
DNA (342bp) protein (114aa)
Putative uncharacterized protein id=1343553 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22552..22794
DNA (243bp) protein (81aa)
Putative uncharacterized protein id=1343551 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22883..23452
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003686672
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98731.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_118_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23497..24600
DNA (1104bp) protein (368aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37)
uroporphyrinogen decarboxylase n=1 Tax=Thiobacillus denitrificans RepID=UPI000374737F
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24658..25500
DNA (843bp) protein (281aa)
import inner membrane translocase subunit Tim44 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E5B5B
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_118_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25844..28003
DNA (2160bp) protein (720aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003644F97
replication restart DNA helicase PriA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_118_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


28110..29783
DNA (1674bp) protein (558aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase id=1348381 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_118_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29786..30346
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DD89D
FtsN cell division protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 89 in total

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