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RTP_02272018_0_2um_scaffold_342

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Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_342_1
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

559..1542
DNA (984bp) protein (328aa)
ABC-type phosphate transport system periplasmic protein; K02040 phosphate transport system substrate-binding protein id=12498550 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ABC-type phosphate transport system periplasmic protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_02272018_0_2um_scaffold_342_2
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1622..2233
DNA (612bp) protein (204aa)
signal peptide id=12498549 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
signal peptide
Tax=RBG_16_Gallionellales_56_9_curated
RTP_02272018_0_2um_scaffold_342_3
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2342..4618
DNA (2277bp) protein (759aa)
ABC transporter permease; K02037 phosphate transport system permease protein id=12498548 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ABC transporter permease
Tax=CG_Rhodocyc_01
RTP_02272018_0_2um_scaffold_342_4
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4630..6285
DNA (1656bp) protein (552aa)
membrane protein component of ABC phosphate transporter pstA-like; K02038 phosphate transport system permease protein id=12498547 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
membrane protein component of ABC phosphate transporter pstA-like
Tax=CG_Rhodocyc_01
RTP_02272018_0_2um_scaffold_342_5
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6330..7157
DNA (828bp) protein (276aa)
phosphate ABC transporter ATPase (EC:3.6.3.27); K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] id=12498546 bin=THIO_MID species=Methyloglobulus morosus genus=Methyloglobulus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
phosphate ABC transporter ATPase (EC:3.6.3.27)
Tax=CG_Rhodocyc_01
RTP_02272018_0_2um_scaffold_342_6
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7177..7551
DNA (375bp) protein (125aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPQ0_9RHIZ
phoU; phosphate transport system regulatory protein PhoU
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_02272018_0_2um_scaffold_342_7
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7659..8459
DNA (801bp) protein (267aa)
ompR1; Transcriptional regulatory protein ompR id=12498545 bin=THIO_MID species=Ideonella sp. B508-1 genus=Ideonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
winged helix family two component transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
RTP_02272018_0_2um_scaffold_342_trna_1
unknown

Not on your lists

comp(8650..8723)
DNA (74bp)
transferRNA Met
RTP_02272018_0_2um_scaffold_342_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8921..10852)
DNA (1932bp) protein (644aa)
RNA polymerase sigma factor RpoD n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B45C6
carbamoyl-phosphate synthase L chain, ATP-binding
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_342_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10967..12670)
DNA (1704bp) protein (568aa)
DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Thiobacillus thioparus RepID=UPI00037FC31F
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_342_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12713..13189)
DNA (477bp) protein (159aa)
hypothetical protein; K09117 hypothetical protein id=12493250 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_342_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13235..13447)
DNA (213bp) protein (71aa)
30S ribosomal protein S21 id=1320212 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rpsU; 30S ribosomal protein S21
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_342_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13551..14573
DNA (1023bp) protein (341aa)
o-sialoglycoprotein endopeptidase (EC:3.4.24.57)
UGMP family protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035F8827
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_342_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14599..15393)
DNA (795bp) protein (265aa)
Putative uncharacterized protein id=1320214 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_342_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15417..16019)
DNA (603bp) protein (201aa)
glycerol-3-phosphate acyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00038288E8
acyl-phosphate glycerol-3-phosphate acyltransferase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_342_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16099..16461
DNA (363bp) protein (121aa)
Dihydroneopterin aldolase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGB6_THIDA
dihydroneopterin aldolase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_342_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16461..17210
DNA (750bp) protein (250aa)
Putative uncharacterized protein id=1320217 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_342_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17207..18163
DNA (957bp) protein (319aa)
succinylglutamate desuccinylase n=1 Tax=Thiobacillus thioparus RepID=UPI000362733F
succinylglutamate desuccinylase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_342_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18165..19055)
DNA (891bp) protein (297aa)
tyrosine recombinase XerD n=1 Tax=Thiobacillus thioparus RepID=UPI000380E9BF
tyrosine recombinase XerD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_342_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19036..19509)
DNA (474bp) protein (158aa)
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B6E16
methylated-DNA-(protein)-cysteine S-methyltransferase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_342_20
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20283..20900
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Pseudomonas mendocina RepID=UPI00037AA30E
Uncharacterized protein {ECO:0000313|EMBL:KGJ63885.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_342_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21761..22156)
DNA (396bp) protein (132aa)
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 id=12493275 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplS; 50S ribosomal protein L19
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_342_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22247..23014)
DNA (768bp) protein (256aa)
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] id=12493276 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_342_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23025..23531)
DNA (507bp) protein (169aa)
Ribosome maturation factor RimM n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RIMM_THIDA
16S rRNA-processing protein RimM
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_342_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23545..23805)
DNA (261bp) protein (87aa)
30S ribosomal protein S16 id=1368682 bin=GWE1_T_denit_62_9 species=Laribacter hongkongensis genus=Laribacter taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ribosomal protein S16
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_342_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23880..25223)
DNA (1344bp) protein (448aa)
signal recognition particle protein Srp54 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EB4F9
signal recognition particle subunit FFH/SRP54 (srp54)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_342_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25293..26078
DNA (786bp) protein (262aa)
Transmembrane protein id=1368680 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transmembrane protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_342_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26129..27427
DNA (1299bp) protein (433aa)
Probable transmembrane protein id=1368679 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transmembrane protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_342_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27528..29243
DNA (1716bp) protein (572aa)
type IV pilus assembly protein, PilB; K02652 type IV pilus assembly protein PilB id=12493282 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
type IV pilus assembly protein, PilB
Type IV pilus assembly protein, PilB {ECO:0000313|EMBL:AAZ98323.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_342_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29421..30641
DNA (1221bp) protein (407aa)
type II secretion system protein F n=1 Tax=Thiobacillus denitrificans RepID=UPI00036197AC
type IV pilus assembly protein PilC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 48 in total

View Taxonomy