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RTP_02272018_0_2um_scaffold_410

Search features with annotation key words

Displaying items 31-60 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_410_31
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27041..27589)
DNA (549bp) protein (183aa)
def; peptide deformylase (EC:3.5.1.88)
peptide deformylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036ED62C
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_32
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27568..28242)
DNA (675bp) protein (225aa)
ribosomal small subunit pseudouridine synthase A (EC:5.4.99.-)
Pseudouridine synthase id=1362740 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_33
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28313..29074)
DNA (762bp) protein (254aa)
5'-methylthioadenosine phosphorylase (EC:2.4.2.28)
5''''-methylthioadenosine phosphorylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036457D8
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_410_34
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29076..29621)
DNA (546bp) protein (182aa)
hypoxanthine-guanine phosphoribosyltransferase (EC:2.4.2.8)
hypoxanthine phosphoribosyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI000372B024
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_410_35
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29710..30264
DNA (555bp) protein (185aa)
N-acetyl-anhydromuranmyl-L-alanine amidase n=1 Tax=Thiobacillus thioparus RepID=UPI000370C729
N-acetyl-anhydromuranmyl-L-alanine amidase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_410_36
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30765..31961
DNA (1197bp) protein (399aa)
purT; phosphoribosylglycinamide formyltransferase 2 (EC:2.1.2.-)
phosphoribosylglycinamide formyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003695FEE
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_410_37
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31980..32360
DNA (381bp) protein (127aa)
globin n=1 Tax=Thiobacillus denitrificans RepID=UPI0003752B19
oxygen-binding protein
Putative oxygen-binding protein (Globin) {ECO:0000313|EMBL:AAZ96727.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_410_38
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32360..33619
DNA (1260bp) protein (420aa)
Putative uncharacterized protein id=1360192 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_39
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33673..35505
DNA (1833bp) protein (611aa)
GTP-binding protein TypA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKQ2_THIDA
GTP-binding protein TypA {ECO:0000313|EMBL:AAZ96725.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
GTP-binding protein TypA
RTP_02272018_0_2um_scaffold_410_40
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35620..36912
DNA (1293bp) protein (431aa)
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361C641
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_410_41
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36915..37694
DNA (780bp) protein (260aa)
hypothetical protein; K09933 hypothetical protein id=12493316 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_410_42
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37681..38850
DNA (1170bp) protein (390aa)
aminotransferase (EC:2.6.1.-)
aminotransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00038032DA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_43
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39560..41266
DNA (1707bp) protein (569aa)
MSHA biogenesis protein MshE n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002F8D32B
MSHA biogenesis protein MshE {ECO:0000313|EMBL:KIF82271.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
general secretion pathway protein E
RTP_02272018_0_2um_scaffold_410_44
Leptonema illini, Leptonema, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

41400..41657
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Leptonema illini DSM 21528 RepID=H2CIT6_9LEPT
Uncharacterized protein {ECO:0000313|EMBL:EHQ08103.1}; TaxID=929563 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptonema.;" source="Leptonema illini DSM 21528.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_410_45
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41930..43078
DNA (1149bp) protein (383aa)
MSHA biogenesis protein MshG n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002D55255
Type IV pilus assembly protein tapC
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_02272018_0_2um_scaffold_410_46
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43234..43758
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002E2737C
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_02272018_0_2um_scaffold_410_47
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44207..44689
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002F99FF3
Type II secretory pathway, pseudopilin PulG
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_02272018_0_2um_scaffold_410_48
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44818..45213
DNA (396bp) protein (132aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B7S2_9PROT
prepilin-type N-terminal cleavage/methylation domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
RTP_02272018_0_2um_scaffold_410_49
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45326..45784
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YC00_9BURK
methylation
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
RTP_02272018_0_2um_scaffold_410_50
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45774..46388
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AB24_9PROT
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_410_51

Not on your lists

46378..47223
DNA (846bp) protein (282aa)
Putative Type II secretory pathway, pseudopilin PulG n=1 Tax=mine drainage metagenome RepID=E6QTX0_9ZZZZ
Putative Type II secretory pathway, pseudopilin PulG {ECO:0000313|EMBL:CBI10692.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
mshO; type IV pilus minor pilin MshO
RTP_02272018_0_2um_scaffold_410_52
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47213..47752
DNA (540bp) protein (180aa)
hypothetical protein; K12286 MSHA biogenesis protein MshP id=12493305 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
RTP_02272018_0_2um_scaffold_410_53
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47749..50376
DNA (2628bp) protein (876aa)
hypothetical protein n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI000376A693
mannose-sensitive agglutinin (MSHA) biogenesis protein MshQ
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
RTP_02272018_0_2um_scaffold_410_54
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50821..51732
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000315A6E1
mannose-sensitive agglutinin (MSHA) biogenesis protein MshI
Tax=RBG_16_Gallionellales_56_9_curated
RTP_02272018_0_2um_scaffold_410_55
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51729..52361
DNA (633bp) protein (211aa)
Putative mannose-sensitive agglutinin (MSHA) n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CNC4_SIDLE
mannose-sensitive agglutinin (MSHA)
Tax=GWA2_Gallionellales_60_18_curated
RTP_02272018_0_2um_scaffold_410_56

Not on your lists

52358..53074
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTW3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10685.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative mannose-sensitive agglutinin (MSHA) biogenesis protein MshJ
RTP_02272018_0_2um_scaffold_410_57
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53748..54008
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000374536D
mannose-sensitive agglutinin (MSHA) biogenesis protein MshK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
RTP_02272018_0_2um_scaffold_410_58
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54039..55838
DNA (1800bp) protein (600aa)
Type II and III secretion system protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CNC1_SIDLE
General secretion pathway protein GspD {ECO:0000313|EMBL:KIF82283.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
type II and III secretion system protein
RTP_02272018_0_2um_scaffold_410_59
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55861..56772
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003095711
mshM; MSHA biogenesis protein MshM
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_02272018_0_2um_scaffold_410_60
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56754..57899
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00037A0B7F
MSHA biogenesis protein MshN
Uncharacterized protein {ECO:0000313|EMBL:CAL62087.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
Displaying items 31-60 of 62 in total

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