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RTP_02272018_0_2um_scaffold_410

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_410_1
unknown

Not on your lists

comp(1..60)
DNA (60bp) protein (20aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_410_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136..1104)
DNA (969bp) protein (323aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
ribosomal large subunit pseudouridine synthase D n=1 Tax=Thiobacillus thioparus RepID=UPI000364D88F
RTP_02272018_0_2um_scaffold_410_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1208..1939
DNA (732bp) protein (244aa)
competence protein ComL n=1 Tax=Thiobacillus denitrificans RepID=UPI00036757FD
competence lipoprotein
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_410_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1994..2332)
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CFA49
nitrogen regulatory protein P-II
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_410_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2451..4058)
DNA (1608bp) protein (536aa)
NH(3)-dependent NAD(+) synthetase (EC:6.3.1.5)
NAD synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI0003707EDD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_410_6
unknown

Not on your lists

comp(4080..4208)
DNA (129bp) protein (43aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_410_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4205..5080)
DNA (876bp) protein (292aa)
succinyl-CoA synthetase (ADP-forming) subunit alpha (EC:6.2.1.5)
succinyl-CoA synthetase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI00036CB774
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_410_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5077..6237)
DNA (1161bp) protein (387aa)
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
malate--CoA ligase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI000371A66E
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_410_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6243..7427
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000364A37B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96757.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_410_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7481..7933)
DNA (453bp) protein (151aa)
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C5C1C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_410_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7946..8551)
DNA (606bp) protein (202aa)
RNase HII (EC:3.1.26.4)
ribonuclease HII n=1 Tax=Thiobacillus denitrificans RepID=UPI0003639580
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_410_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8548..9672)
DNA (1125bp) protein (375aa)
lipid-A-disaccharide synthase (EC:2.4.1.182)
lipid-A-disaccharide synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036CD801
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9669..10439)
DNA (771bp) protein (257aa)
UDP-N-acetylglucosamine acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase id=1350783 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10450..10629)
DNA (180bp) protein (60aa)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_410_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10686..11129)
DNA (444bp) protein (148aa)
3-hydroxyacyl-ACP dehydratase (EC:4.2.1.-)
3-hydroxyacyl-ACP dehydratase n=1 Tax=Thiobacillus thioparus RepID=UPI00037CDE08
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11126..12154)
DNA (1029bp) protein (343aa)
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC:2.3.1.-)
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035EA099
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12164..12670)
DNA (507bp) protein (169aa)
Putative outer membrane protein id=1350780 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
outer membrane protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12696..15035)
DNA (2340bp) protein (780aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003719362
surface antigen (D15)
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15043..16395)
DNA (1353bp) protein (451aa)
peptidase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BAE76
peptidase M50 membrane-associated zinc metallopeptidase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_410_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16392..17591)
DNA (1200bp) protein (400aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F038E
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17588..18394)
DNA (807bp) protein (269aa)
Phosphatidate cytidylyltransferase id=1362211 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
phosphatidate cytidylyltransferase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18417..19178)
DNA (762bp) protein (254aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
UDP diphosphate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000360AA51
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19188..19748)
DNA (561bp) protein (187aa)
ribosome recycling factor n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BBA99
ribosome recycling factor
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_410_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19758..20471)
DNA (714bp) protein (238aa)
uridylate kinase (EC:2.7.4.-)
uridylate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D1408
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20478..21350)
DNA (873bp) protein (291aa)
tsf; elongation factor Ts; K02357 elongation factor Ts id=12493333 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
tsf; elongation factor Ts
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_410_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21471..22217)
DNA (747bp) protein (249aa)
30S ribosomal protein S2 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RS2_THIDA
30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000255|HAMAP-Rule:MF_00291}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_410_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22532..23359
DNA (828bp) protein (276aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase id=1362735 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23521..26109
DNA (2589bp) protein (863aa)
PII uridylyl-transferase (EC:2.7.7.59)
PII uridylyl-transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BC188
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26286..26537)
DNA (252bp) protein (84aa)
Putative uncharacterized protein id=1362737 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_410_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26534..26917)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F73B1
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 62 in total

View Taxonomy