ggKbase home page

RTP_02272018_0_2um_scaffold_410_58

Organism: RTP_02272018_0_2um_Hydrogenophilales_62_27

near complete RP 49 / 55 MC: 2 BSCG 48 / 51 MC: 1 ASCG 13 / 38 MC: 2
Location: 54039..55838

Top 3 Functional Annotations

Value Algorithm Source
Type II and III secretion system protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CNC1_SIDLE similarity UNIREF
DB: UNIREF100
  • Identity: 53.4
  • Coverage: 590.0
  • Bit_score: 557
  • Evalue 1.20e-155
General secretion pathway protein GspD {ECO:0000313|EMBL:KIF82283.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.0
  • Coverage: 600.0
  • Bit_score: 592
  • Evalue 3.70e-166
type II and III secretion system protein similarity KEGG
DB: KEGG
  • Identity: 53.4
  • Coverage: 590.0
  • Bit_score: 557
  • Evalue 3.50e-156

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Herbaspirillum sp. TSA66 → Herbaspirillum → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1800
ATGCGCAAACAAACTATTTGCCGCCAATTGCGGGCAGCCGGGCCGGGCTTCCTCGGCCTTGCCGCGCTGATTCTGACCGGCTGCGCGGAACTGGCGCCCAGGAATACTGCAGCCTTCGACCAGATCAACGCCGAGCTCGACAAGGCCGCCGAAAGCAAGCCCAAGCCGGCGCAGCCGGCCGCGGTCGATGCCGCGCTGCTGCCGCCGCTCAAGGTGGAAATACCCAAGGCCAGAAAAGTGCTGGAGGACAAATTCGACCTGTCGATCAATAATGCGCCGGCCAGCCAGGTATTCCTGAGCATTGTTTCGGGAACGCGCTACAGCATGCTGGTGCATCCGGATGTGCGCGGCAATATTTCGGTCAACCTCAAGGATGTGACCGTATTCGAGGCGCTGGATGCCGTCCGCGAACTCTACGGTTTCAACTACAGGGTGGATGGCACGCGGATTTTCATCCAGCCGCTGACCGGGCCGGCGCGCCGTCGCCGCTGCGCGATAGGATGGGTGGATGGCACGCGGATTTTCATCCAGCCGCTGACCATGCAGTCCAGGGTGTTTCAGGTGAACCACCTGAGCGCCAACCGCAAGGGGTCGTCCGATGTGCGGGTCATCTCCGGCTCCGTCAGCGATTCGCCGCGTACCGCCACGCCCGGCGCCGGCATGCCGGCCACCACCTCGCCCGGAACGTCAGAATCCATCCAGAGCACACGCATTTCGACCACCTCGGAAGTCAATTTCTGGGGCGAGCTGGCGACGGCGGTGCGCACAATCGTCGGCACCGAAGACGGTCGCAACGTGGTGGTGAGCCCGCAATCCGGCGTGCTCGTGGTGCGCGCCCTGCCCAACGAGTTGCACACGGTGGAGCAGTACCTCAGGGCAGCCCAGGTGGCGGTGGACCGGCAGGTGATCATCGAGGCGAAGATCATCGAGGTGGAACTGAACGACGGCTTCCAGACCGGCATCAACTGGGCAGCGTTCAACCGCAACGGCCAGCACCGATTCTCGGTAGGCGCCGATCCTGCCCGCTTTACCCTGCCGGATGGCACCACGACTACCGGAAGCACGCTCGGCAGCGTCCTCGGCGCGGGCTTATCGACTGCGGCCACGTCGGGAGGGCTGCTCAACATCGCCGCTCAGGCCAGCAATTTCGCCGCGCTGCTCTCCTTCCTGGAAACCCAGGGCGGCGTGCAGGTGCTGTCCAGCCCGCGCATCGCCACGCTCAACAACCAGAAGGCGGTGCTGAAGGTCGGGACGGATGATTTCTTCGTGACTAATGTATCCTCAAGCACAATTGCAACTGGTGGCACTGGTACTGTTACGACGCCGAACGTGACCCTGCAGCCCTTCTTCTCCGGCATCGTGCTGGACGTGACGCCGCAAATCGACGAGAACGACAACATCACCCTGCACATCCATCCTTCCGTCAGCAAGGTGGTGACCAAAAACACGGTCATCAACCTGGGCGGAACCTCAGGGTCGCTTAACCTGCCGCTCGCCTCCAGCACGGTGAGCGAAACCGACAGCATCGTCCGCGCCCAGGATGGCCAGGTCGTGGCCATCGGCGGGCTGATGAAAATGTCCTCGGTGTCGGATAATTCGCAGGTGCCGGTGGCGGGCGAAATCCCGCTGTTCGGCAACCTGTTCAAGCAGACCAGCCGCGCCAGCGTGAAAAAGGAACTGGTGATCCTGCTCAAGCCGACCATCGTGCGCGGCGGCGACTGGAGCCAGGACATCCTGGAAAGCCGCGACCGCATCCAGAACATGCAGCGCGGCACTGGCGACGGTTCGCAGGCCCGGTGA
PROTEIN sequence
Length: 600
MRKQTICRQLRAAGPGFLGLAALILTGCAELAPRNTAAFDQINAELDKAAESKPKPAQPAAVDAALLPPLKVEIPKARKVLEDKFDLSINNAPASQVFLSIVSGTRYSMLVHPDVRGNISVNLKDVTVFEALDAVRELYGFNYRVDGTRIFIQPLTGPARRRRCAIGWVDGTRIFIQPLTMQSRVFQVNHLSANRKGSSDVRVISGSVSDSPRTATPGAGMPATTSPGTSESIQSTRISTTSEVNFWGELATAVRTIVGTEDGRNVVVSPQSGVLVVRALPNELHTVEQYLRAAQVAVDRQVIIEAKIIEVELNDGFQTGINWAAFNRNGQHRFSVGADPARFTLPDGTTTTGSTLGSVLGAGLSTAATSGGLLNIAAQASNFAALLSFLETQGGVQVLSSPRIATLNNQKAVLKVGTDDFFVTNVSSSTIATGGTGTVTTPNVTLQPFFSGIVLDVTPQIDENDNITLHIHPSVSKVVTKNTVINLGGTSGSLNLPLASSTVSETDSIVRAQDGQVVAIGGLMKMSSVSDNSQVPVAGEIPLFGNLFKQTSRASVKKELVILLKPTIVRGGDWSQDILESRDRIQNMQRGTGDGSQAR*