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RTP_02272018_0_2um_scaffold_502

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_502_trna_2
unknown

Not on your lists

comp(57..130)
DNA (74bp)
transferRNA Met
RTP_02272018_0_2um_scaffold_502_1
unknown

Not on your lists

comp(194..400)
DNA (207bp) protein (69aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_502_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

419..1606
DNA (1188bp) protein (396aa)
Iron-containing alcohol dehydrogenase id=1363289 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
iron-containing alcohol dehydrogenase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_502_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1682..2254
DNA (573bp) protein (191aa)
Putative uncharacterized protein id=1363288 bin=GWE1_T_denit_62_9 species=Methylophaga aminisulfidivorans genus=Methylophaga taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
LemA family
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_502_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2254..3156
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B8EE6
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_502_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3216..3491
DNA (276bp) protein (92aa)
Putative uncharacterized protein id=1363286 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_502_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3596..5056)
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003762D84
flavodoxin oxidoreductase
Putative flavodoxin oxidoreductase {ECO:0000313|EMBL:AAZ97723.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_502_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5161..6855
DNA (1695bp) protein (565aa)
exonuclease RecJ (EC:3.1.-.-)
single-stranded DNA exonuclease n=1 Tax=Thiobacillus thioparus RepID=UPI0003649E06
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_502_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6869..7879)
DNA (1011bp) protein (337aa)
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Thiobacillus thioparus RepID=UPI000369510D
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_502_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7963..8991)
DNA (1029bp) protein (343aa)
GDP-L-fucose synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00035F6B5E
GDP-L-fucose synthetase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_502_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8996..10081)
DNA (1086bp) protein (362aa)
GDP-mannose 4,6-dehydratase id=1295752 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
GDP-mannose 4,6-dehydratase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_502_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10265..11194)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000380D3A5
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_502_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11417..11674
DNA (258bp) protein (86aa)
Putative uncharacterized protein id=1331298 bin=GWE1_T_denit_62_9 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_502_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11671..13254
DNA (1584bp) protein (528aa)
Periplasmic Sensor Signal Transduction Histidine Kinase id=1331297 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
periplasmic sensor signal transduction histidine kinase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_502_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13257..14573
DNA (1317bp) protein (439aa)
Two Component Transcriptional Regulator, Fis family id=1331296 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Fis family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_502_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14799..15890
DNA (1092bp) protein (364aa)
Site-specific recombinase, phage integrase family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHX2_THIDA
phage integrase site specific recombinase
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:AAZ97761.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_502_16

Not on your lists

15927..16175
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T0ZV97_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD48537.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_502_17
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16162..16587
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q7WWW5_CUPNH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAP86126.1}; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
RTP_02272018_0_2um_scaffold_502_18
unknown

Not on your lists

comp(16625..16873)
DNA (249bp) protein (83aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_502_19
unknown

Not on your lists

comp(16870..17235)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003722A79
RTP_02272018_0_2um_scaffold_502_20
unknown

Not on your lists

18038..18688
DNA (651bp) protein (217aa)
Uncharacterized protein n=4 Tax=Vibrio cholerae RepID=J1DM43_VIBCL
RTP_02272018_0_2um_scaffold_502_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18884..19666)
DNA (783bp) protein (261aa)
Putative ATP-dependent exoDNAse (Exonuclease V) alpha subunit n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI89_THIDA
ATP-dependent exoDNAse (exonuclease V) subunit alpha
Putative ATP-dependent exoDNAse (Exonuclease V) alpha subunit {ECO:0000313|EMBL:AAZ97639.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_502_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19815..20240)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI91_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97637.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_502_23
unknown

Not on your lists

comp(20255..20932)
DNA (678bp) protein (226aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_502_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20938..24036)
DNA (3099bp) protein (1033aa)
Putative ATP-dependent exoDNAse (Exonuclease V) alpha subunit n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI89_THIDA
ATP-dependent exoDNAse (exonuclease V) subunit alpha
Putative ATP-dependent exoDNAse (Exonuclease V) alpha subunit {ECO:0000313|EMBL:AAZ97639.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_502_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24037..26367)
DNA (2331bp) protein (777aa)
Putative type IV secretory pathway VirD4 components n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI88_THIDA
type IV secretory pathway VirD4 components
Putative type IV secretory pathway VirD4 components {ECO:0000313|EMBL:AAZ97640.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_502_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26370..27575)
DNA (1206bp) protein (402aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI87_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97641.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_502_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27575..28030)
DNA (456bp) protein (152aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI86_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97642.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_502_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28031..28621)
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI85_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97643.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_502_29
unknown

Not on your lists

comp(28618..28878)
DNA (261bp) protein (87aa)

This feature has no annotations

Displaying items 1-30 of 39 in total

View Taxonomy