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RTP_02272018_0_2um_scaffold_864

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_864_1
unknown

Not on your lists

3..101
DNA (99bp) protein (33aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_864_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116..391
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHW7_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97766.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_864_3
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

680..1441
DNA (762bp) protein (254aa)
Type III restriction enzyme, res subunit n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X068_9BURK
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:EON12879.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
type III restriction enzyme, res subunit
RTP_02272018_0_2um_scaffold_864_trna_1
unknown

Not on your lists

comp(1642..1732)
DNA (91bp)
transferRNA Ser
RTP_02272018_0_2um_scaffold_864_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1783..3012)
DNA (1230bp) protein (410aa)
aspartate kinase (EC:2.7.2.4)
aspartate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI000373C037
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_864_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3080..4378)
DNA (1299bp) protein (433aa)
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
23S rRNA methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003787200
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_864_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4375..5166)
DNA (792bp) protein (264aa)
3''''-5'''' exonuclease n=1 Tax=Thiobacillus thioparus RepID=UPI0003712DBE
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_864_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5241..6533)
DNA (1293bp) protein (431aa)
Predicted signal transduction protein containing EAL and modified HD-GYP domains id=1321122 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
signal transduction protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_864_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6663..8315)
DNA (1653bp) protein (551aa)
glucose-6-phosphate isomerase (EC:5.3.1.9)
glucose-6-phosphate isomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003768BEF
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_864_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8421..8906
DNA (486bp) protein (162aa)
peptidylprolyl isomerase n=1 Tax=Thiobacillus thioparus RepID=UPI00036A19FC
FKBP-type peptidylprolyl isomerase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_864_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9121..9633)
DNA (513bp) protein (171aa)
sterol-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036800B5
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_864_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9847..10521)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C5AF3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96930.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_864_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10518..11444)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000375A3B9
ABC-type transport system periplasmic component
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_864_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11441..11863)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037E82BA
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_864_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11890..12684)
DNA (795bp) protein (265aa)
ABC-type transport system ipermease component id=1351336 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ABC-type transport system permease
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_864_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12770..13300
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003645DD9
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_864_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13300..14241
DNA (942bp) protein (314aa)
peptidase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A6678
TPR repeat-containing Zn-dependent protease
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_864_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14241..16454
DNA (2214bp) protein (738aa)
Adenylyl cyclase class-3/4/guanylyl cyclase id=1351339 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
adenylyl cyclase class-3/4/guanylyl cyclase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_864_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16472..17236
DNA (765bp) protein (255aa)
cyclic-AMP phosphodiesterase id=12493389 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cyclic-AMP phosphodiesterase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_864_19
Plesiomonas shigelloides, Plesiomonas, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17379..17774)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Plesiomonas shigelloides 302-73 RepID=R8ARN8_PLESH
Uncharacterized protein {ECO:0000313|EMBL:EON89002.1}; TaxID=1315976 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Plesiomonas.;" source="Plesiomonas shigelloides 302-73.;"
RTP_02272018_0_2um_scaffold_864_20
unknown

Not on your lists

comp(18156..18260)
DNA (105bp) protein (35aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_864_21
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18290..18994
DNA (705bp) protein (235aa)
Sulfate permease and related transporters (MFS superfamily) n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DV76_THIND
yvdB_[H]; Sulfate permease and related transporters (MFS superfamily)
Sulfate permease and related transporters (MFS superfamily) {ECO:0000313|EMBL:AGA32271.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
RTP_02272018_0_2um_scaffold_864_22
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19025..20311)
DNA (1287bp) protein (429aa)
Putative permease n=1 Tax=mine drainage metagenome RepID=E6QQM4_9ZZZZ
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_864_23

Not on your lists

comp(20308..20526)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QQM3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09544.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_864_24

Not on your lists

comp(20523..20981)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QQM2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09543.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_864_25
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21435..21809
DNA (375bp) protein (125aa)
Nitrite reductase n=2 Tax=Sulfuricella denitrificans RepID=S6A9J4_9PROT
Nitrite reductase {ECO:0000313|EMBL:GAO37154.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
napG; nitrite reductase precursor
Displaying 26 items

View Taxonomy