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RTP_03222018_0_1um_scaffold_166

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Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_166_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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29..508
DNA (480bp) protein (160aa)
bacterioferritin; K03594 bacterioferritin id=12497953 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
bacterioferritin
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_166_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

667..1395
DNA (729bp) protein (243aa)
Periplasmic protein TonB id=1317132 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
periplasmic protein TonB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_166_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1398..2144
DNA (747bp) protein (249aa)
flagellar motor protein MotA n=1 Tax=Thiobacillus denitrificans RepID=UPI000372CEAE
MotA/TolQ/ExbB proton channel family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_166_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2144..2572
DNA (429bp) protein (143aa)
biopolymer transporter ExbD n=1 Tax=Thiobacillus denitrificans RepID=UPI0003653113
biopolymer transport protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_166_5
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2600..4756
DNA (2157bp) protein (719aa)
putative TonB-denpendent receptor; K02014 iron complex outermembrane recepter protein id=12497352 bin=THIO_MID species=Thauera sp. 27 genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative TonB-denpendent receptor
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
RTP_03222018_0_1um_scaffold_166_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4753..5400
DNA (648bp) protein (216aa)
Putative uncharacterized protein id=1349958 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_166_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5403..5588
DNA (186bp) protein (62aa)
4-oxalocrotonate tautomerase n=1 Tax=Thiobacillus thioparus RepID=UPI00037C7292
isomerase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_166_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5592..7388
DNA (1797bp) protein (599aa)
excinuclease ABC subunit C n=1 Tax=Thiobacillus thioparus RepID=UPI00036779C0
excinuclease ABC subunit C
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_166_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7388..7957
DNA (570bp) protein (190aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003697E51
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_166_trna_1
unknown

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8007..8079
DNA (73bp)
transferRNA Gly
RTP_03222018_0_1um_scaffold_166_trna_2
unknown

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8152..8222
DNA (71bp)
transferRNA Cys
RTP_03222018_0_1um_scaffold_166_trna_3
unknown

Not on your lists

8414..8497
DNA (84bp)
transferRNA Leu
RTP_03222018_0_1um_scaffold_166_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8559..8987
DNA (429bp) protein (143aa)
ribosome maturation protein RimP n=1 Tax=Thiobacillus thioparus RepID=UPI000374747A
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_166_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9007..10485
DNA (1479bp) protein (493aa)
peptidase M54 n=1 Tax=Thiobacillus denitrificans RepID=UPI000378F4D3
NusA antitermination factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_166_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10503..13112
DNA (2610bp) protein (870aa)
translation initiation factor IF-2 n=1 Tax=Thiobacillus thioparus RepID=UPI000364F979
infB; translation initiation factor IF-2
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_166_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13112..13486
DNA (375bp) protein (125aa)
ribosome-binding factor A n=1 Tax=Thiobacillus thioparus RepID=UPI000372DC32
ribosome-binding factor A
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_166_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13483..14379
DNA (897bp) protein (299aa)
tRNA pseudouridine synthase B (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] id=12495473 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B {ECO:0000255|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000255|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000255|HAMAP-Rule:MF_01080}; Short=Psi55 synthase {ECO:0000255|HAMAP-Rule:MF_01080};; tRNA pseudouridylate synthase {ECO:0000255|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000255|HAMAP-Rule:MF_01080}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_166_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14469..14738
DNA (270bp) protein (90aa)
30S ribosomal protein S15 id=1324183 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
30S ribosomal protein S15
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_166_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14896..17043
DNA (2148bp) protein (716aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase {ECO:0000255|HAMAP-Rule:MF_01595};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
polynucleotide phosphorylase/polyadenylase n=1 Tax=Thiobacillus thioparus RepID=UPI00036D5EBA
polynucleotide phosphorylase
RTP_03222018_0_1um_scaffold_166_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17098..18480)
DNA (1383bp) protein (461aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037464E3
two component transcriptional regulator, sensor histidine kinase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_166_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18483..19151)
DNA (669bp) protein (223aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00037576C5
putative response regulator, CheY family
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_166_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19646..20089)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A018F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96645.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_166_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20171..20590)
DNA (420bp) protein (140aa)
RNA polymerase-binding transcription factor DksA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKX7_THIDA
TraR/DksA family transcriptional regulator
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_166_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20681..21439
DNA (759bp) protein (253aa)
HAD-superfamily hydrolase subfamily IA, variant 3 id=1324188 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
HAD family hydrolase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_166_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21473..22327)
DNA (855bp) protein (285aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
methenyltetrahydrofolate cyclohydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI0003648A7F
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_166_trna_4
unknown

Not on your lists

22463..22543
DNA (81bp)
transferRNA Pro
RTP_03222018_0_1um_scaffold_166_trna_5
unknown

Not on your lists

22570..22643
DNA (74bp)
transferRNA Arg
RTP_03222018_0_1um_scaffold_166_trna_6
unknown

Not on your lists

22684..22756
DNA (73bp)
transferRNA His
RTP_03222018_0_1um_scaffold_166_23
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23133..31763
DNA (8631bp) protein (2877aa)
hypothetical protein id=15194138 bin=GWC2_NOV_55_46 species=Nitrosomonas sp. AL212 genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
RTP_03222018_0_1um_scaffold_166_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32048..32344
DNA (297bp) protein (99aa)
Uncharacterized protein id=1312412 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 62 in total

View Taxonomy