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RTP_03222018_0_1um_scaffold_398

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_398_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

227..2239
DNA (2013bp) protein (671aa)
cytochrome C biogenesis protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F3251
cytochrome c-type biogenesis protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_398_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2277..3416
DNA (1140bp) protein (380aa)
Putative transmembrane cytochrome C-type biogenesis transmembrane protein id=1366631 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transmembrane cytochrome C-type biogenesis transmembrane protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_398_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3607..4134
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003693E55
thioredoxin
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_398_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4210..4740
DNA (531bp) protein (177aa)
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase id=1366633 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_398_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4709..5155
DNA (447bp) protein (149aa)
Acetyl-CoA biotin carboxyl carrier id=1366634 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
biotin carboxyl carrier protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_398_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5279..6628
DNA (1350bp) protein (450aa)
acetyl-CoA carboxylase biotin carboxylase subunit (EC:6.4.1.2)
acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Thiobacillus denitrificans RepID=UPI000371FEBF
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:AAZ96134.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_398_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6718..7623
DNA (906bp) protein (302aa)
prmA; ribosomal protein L11 methyltransferase (EC:2.1.1.-)
ribosomal protein L11 methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI000380BC49
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_398_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7701..8651
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037671AA
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_398_9
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8882..9769)
DNA (888bp) protein (296aa)
Cytoplasmic chaperone TorD family protein n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3S0_9GAMM
Cytoplasmic chaperone TorD family protein {ECO:0000313|EMBL:EHQ52457.1}; TaxID=519989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
cytoplasmic chaperone TorD family protein
RTP_03222018_0_1um_scaffold_398_10
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9836..10954)
DNA (1119bp) protein (373aa)
NrfD-family membrane protein n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3R9_9GAMM
NrfD-family membrane protein {ECO:0000313|EMBL:EHQ52456.1}; TaxID=519989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
Polysulfide reductase, NrfD
RTP_03222018_0_1um_scaffold_398_11
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10971..11735)
DNA (765bp) protein (255aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein ArxB n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3R8_9GAMM
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein ArxB {ECO:0000313|EMBL:EHQ52455.1}; TaxID=519989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
hmeA_[H]; Fe-S-cluster-containing hydrogenase components 1
RTP_03222018_0_1um_scaffold_398_12
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11764..14256)
DNA (2493bp) protein (831aa)
phsA_[H]; Formate dehydrogenase O alpha subunit (EC:1.2.1.2)
Anaerobic arsenite oxidase ArxA n=2 Tax=Bacteria RepID=H1G3R7_9GAMM
Anaerobic arsenite oxidase ArxA {ECO:0000313|EMBL:EHQ52454.1}; TaxID=519989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
RTP_03222018_0_1um_scaffold_398_13
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14261..15403)
DNA (1143bp) protein (381aa)
4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein ArxB2 n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3R6_9GAMM
4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein ArxB2 {ECO:0000313|EMBL:EHQ52453.1}; TaxID=519989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
arxB2; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
RTP_03222018_0_1um_scaffold_398_14
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15839..16696
DNA (858bp) protein (286aa)
phosphonate-binding periplasmic protein; K02044 phosphonate transport system substrate-binding protein id=12498532 bin=THIO_MID species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
periplasmic binding protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
RTP_03222018_0_1um_scaffold_398_15
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16693..18099
DNA (1407bp) protein (469aa)
periplasmic sensor signal transduction histidine kinase id=12498533 bin=THIO_MID species=Thioalkalivibrio sp. ARh3 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
periplasmic sensor signal transduction histidine kinase
Tax=CG_Hydro_01
RTP_03222018_0_1um_scaffold_398_16
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18096..19439
DNA (1344bp) protein (448aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003821ABC
Fis family two component sigma-54 specific transcriptional regulator - like protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
RTP_03222018_0_1um_scaffold_398_17
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19436..20251
DNA (816bp) protein (272aa)
phosphonate ABC transporter, periplasmic phosphonate-binding protein; K02044 phosphonate transport system substrate-binding protein id=12498609 bin=THIO_MID species=Thiomicrospira halophila genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
phosphonate ABC transporter periplasmic protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RTP_03222018_0_1um_scaffold_398_18
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20248..21579
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
integral membrane sensor signal transduction histidine kinase id=12498610 bin=THIO_MID species=Thiomicrospira halophila genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
integral membrane sensor signal transduction histidine kinase
RTP_03222018_0_1um_scaffold_398_19
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21576..22919
DNA (1344bp) protein (448aa)
two component, sigma54 specific, transcriptional regulator, Fis family id=12498611 bin=THIO_MID species=Thioalkalimicrobium cyclicum genus=Thioalkalimicrobium taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Fis family transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:AEG31196.1}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
RTP_03222018_0_1um_scaffold_398_20
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23085..23891
DNA (807bp) protein (269aa)
SoxAX cytochrome complex subunit A {ECO:0000256|PIRNR:PIRNR038455}; EC=1.8.2.- {ECO:0000256|PIRNR:PIRNR038455};; Protein SoxA {ECO:0000256|PIRNR:PIRNR038455}; Sulfur oxidizing protein A {ECO:0000256|PIRNR:PIRNR038455}; Thiosulfate-oxidizing multienzyme system protein SoxA {ECO:0000256|PIRNR:PIRNR038455}; Flags: Precursor;; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
hypothetical protein id=12498605 bin=THIO_MID species=Thiothrix disciformis genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
RTP_03222018_0_1um_scaffold_398_21
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23907..24536
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI00036A5C46
Sulfur oxidation protein SoxX {ECO:0000313|EMBL:EJW10472.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
RTP_03222018_0_1um_scaffold_398_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24626..25093
DNA (468bp) protein (156aa)
sulfur oxidation protein SoxY n=1 Tax=Thiobacillus thioparus RepID=UPI000381A352
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_398_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25154..25468
DNA (315bp) protein (105aa)
sulfur oxidation protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036F3BCA
sulfur compound chelating protein SoxZ
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_398_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26159..27253
DNA (1095bp) protein (365aa)
gcvT; glycine cleavage system aminomethyltransferase T (EC:2.1.2.10)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Aminomethyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SMB6_THIDA
RTP_03222018_0_1um_scaffold_398_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27333..27722
DNA (390bp) protein (130aa)
glycine cleavage system protein H n=1 Tax=Thiobacillus thioparus RepID=UPI00038058BB
glycine cleavage system protein H
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_398_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27734..29125
DNA (1392bp) protein (464aa)
glycine dehydrogenase subunit 1 (EC:1.4.4.2)
glycine dehydrogenase subunit 1 n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E916D
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_398_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29138..29425
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036FF497
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_398_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29492..29983
DNA (492bp) protein (164aa)
thiol peroxidase (EC:1.11.1.5)
lipid hydroperoxide peroxidase n=1 Tax=Thiobacillus thioparus RepID=UPI00037E5D00
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_398_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30130..31581
DNA (1452bp) protein (484aa)
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
Probable glycine dehydrogenase (decarboxylating) subunit 2 {ECO:0000255|HAMAP-Rule:MF_00713}; EC=1.4.4.2 {ECO:0000255|HAMAP-Rule:MF_00713};; Glycine cleavage system P-protein subunit 2 {ECO:0000255|HAMAP-Rule:MF_00713}; Glycine decarboxylase subunit 2 {ECO:0000255|HAMAP-Rule:MF_00713}; Glycine dehydrogenase (aminomethyl-transferring) subunit 2 {ECO:0000255|HAMAP-Rule:MF_00713}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Probable glycine dehydrogenase (decarboxylating) subunit 2 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=GCSPB_THIDA
RTP_03222018_0_1um_scaffold_398_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31578..31955
DNA (378bp) protein (126aa)
diacylglycerol kinase (EC:2.7.1.107)
diacylglycerol kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00036F5CB8
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 49 in total

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