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RTP_03222018_0_1um_scaffold_407

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_407_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

111..983
DNA (873bp) protein (291aa)
endo-1,4-D-glucanase n=1 Tax=Thiobacillus thioparus RepID=UPI00036AEC2B
tsf; elongation factor Ts
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_407_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

990..1703
DNA (714bp) protein (238aa)
uridylate kinase (EC:2.7.4.-)
Uridylate kinase {ECO:0000255|HAMAP-Rule:MF_01220}; Short=UK {ECO:0000255|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000255|HAMAP-Rule:MF_01220};; Uridine monophosphate kinase {ECO:0000255|HAMAP-Rule:MF_01220}; Short=UMP kinase {ECO:0000255|HAMAP-Rule:MF_01220};; Short=UMPK {ECO:0000255|HAMAP-Rule:MF_01220};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
uridylate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D1408
RTP_03222018_0_1um_scaffold_407_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1713..2282
DNA (570bp) protein (190aa)
ribosome recycling factor n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BBA99
ribosome recycling factor
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_407_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2292..3053
DNA (762bp) protein (254aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
UDP diphosphate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000360AA51
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_407_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3076..3882
DNA (807bp) protein (269aa)
phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] id=12496937 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
phosphatidate cytidylyltransferase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_407_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3879..5108
DNA (1230bp) protein (410aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F038E
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_407_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5105..6457
DNA (1353bp) protein (451aa)
peptidase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BAE76
peptidase M50 membrane-associated zinc metallopeptidase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_407_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6465..8807
DNA (2343bp) protein (781aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003719362
surface antigen (D15)
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_407_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8832..9338
DNA (507bp) protein (169aa)
Putative outer membrane protein id=1350780 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
outer membrane protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_407_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9365..10396
DNA (1032bp) protein (344aa)
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC:2.3.1.-)
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035EA099
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_407_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10393..10836
DNA (444bp) protein (148aa)
3-hydroxyacyl-ACP dehydratase (EC:4.2.1.-)
3-hydroxyacyl-ACP dehydratase n=1 Tax=Thiobacillus denitrificans RepID=UPI000369F25E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_407_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10838..11614
DNA (777bp) protein (259aa)
UDP-N-acetylglucosamine acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase id=1350783 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_407_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11614..12735
DNA (1122bp) protein (374aa)
lipid-A-disaccharide synthase (EC:2.4.1.182)
lipid-A-disaccharide synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036CD801
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_407_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12732..13337
DNA (606bp) protein (202aa)
RNase HII (EC:3.1.26.4)
ribonuclease HII n=1 Tax=Thiobacillus denitrificans RepID=UPI0003639580
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_407_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13349..13801
DNA (453bp) protein (151aa)
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C5C1C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_407_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13822..14094)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003657A40
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_407_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14216..15217
DNA (1002bp) protein (334aa)
sodium/hydrogen exchanger n=1 Tax=Thiobacillus thioparus RepID=UPI000380EA18
Ca2+/H+ antiporter
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_407_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15291..16490)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000364A37B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96757.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_407_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16496..17656
DNA (1161bp) protein (387aa)
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
malate--CoA ligase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI000371A66E
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_407_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17653..18546
DNA (894bp) protein (298aa)
succinyl-CoA synthetase (ADP-forming) subunit alpha (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKM0_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_407_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18543..20156
DNA (1614bp) protein (538aa)
NH(3)-dependent NAD(+) synthetase (EC:6.3.1.5)
NAD synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI0003707EDD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_407_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20153..20491
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Thiobacillus thioparus RepID=UPI000377105A
nitrogen regulatory protein P-II
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_407_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20550..21116)
DNA (567bp) protein (189aa)
competence protein ComL n=1 Tax=Thiobacillus denitrificans RepID=UPI00036757FD
competence lipoprotein
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_407_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21257..22225
DNA (969bp) protein (323aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
ribosomal large subunit pseudouridine synthase D n=1 Tax=Thiobacillus thioparus RepID=UPI000364D88F
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_407_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22238..22957
DNA (720bp) protein (240aa)
laccase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003753A13
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_407_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22961..23443)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C3BFF
acetyltransferase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_407_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23436..24275)
DNA (840bp) protein (280aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
nicotinate-nucleotide pyrophosphorylase n=1 Tax=Thiobacillus thioparus RepID=UPI0003682D17
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_407_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24346..26937
DNA (2592bp) protein (864aa)
ClpB protein; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB id=12494516 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ClpB protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_407_29
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27364..28158)
DNA (795bp) protein (265aa)
Ferredoxin--NADP+ reductase n=131 Tax=Pseudomonas RepID=B7V125_PSEA8
fpr; ferredoxin-NADP+ reductase
Ferredoxin-NADP reductase {ECO:0000313|EMBL:EZP07542.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
RTP_03222018_0_1um_scaffold_407_30
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28183..29115)
DNA (933bp) protein (311aa)
electron transfer flavoprotein subunit beta n=1 Tax=Chitiniphilus shinanonensis RepID=UPI0003606536
electron transfer flavoprotein subunits alpha/beta
Electron transfer flavoprotein alpha/beta-subunit {ECO:0000313|EMBL:ACT51170.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
Displaying items 1-30 of 75 in total

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