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RTP_03222018_0_2um_scaffold_780

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_780_1

Not on your lists

comp(23..790)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035FBA41
Marine sediment metagenome DNA, contig: S03H2_L07393 {ECO:0000313|EMBL:GAH41375.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
RTP_03222018_0_2um_scaffold_780_2
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(793..1626)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037A7287
glycosyl transferase family protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
RTP_03222018_0_2um_scaffold_780_3
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1623..2570)
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI00035E8E52
NAD-dependent epimerase/dehydratase family {ECO:0000313|EMBL:EON25804.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
UDP-glucose 4-epimerase
RTP_03222018_0_2um_scaffold_780_4
Propionibacterium freudenreichii, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2567..3547)
DNA (981bp) protein (327aa)
putative glycosyltransferase (EC:2.4.-.-)
hypothetical protein n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI000363497F
Putative glycosyl transferase {ECO:0000313|EMBL:CEI46108.1}; TaxID=1744 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium freudenreichii.;"
RTP_03222018_0_2um_scaffold_780_5
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4109..4999)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI0003716107
glycosyltransferase involved in cell wall bioproteinsis
Glycosyltransferase involved in cell wall bioproteinsis {ECO:0000313|EMBL:BAN36202.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_03222018_0_2um_scaffold_780_6
Yersinia mollaretii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5053..5898)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI0003716107
Glycosyltransferase involved in cell wall bioproteinsis {ECO:0000313|EMBL:EEQ12394.1}; TaxID=349967 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia mollaretii ATCC 43969.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_780_7
CG_Magasa_01, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5899..6708)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI000373F5FD
Tax=CG_Magasa_01
RTP_03222018_0_2um_scaffold_780_8
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6718..7992)
DNA (1275bp) protein (425aa)
putative polysaccharide export transport system ATP-binding protein n=1 Tax=Acidovorax radicis RepID=UPI00023754B4
ABC-type polysaccharide/polyol phosphate transport system, ATPase component
ABC-type polysaccharide/polyol phosphate transport system, ATPase component {ECO:0000313|EMBL:AGF78945.1}; TaxID=1167006 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
RTP_03222018_0_2um_scaffold_780_9
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8524..8751)
DNA (228bp) protein (76aa)
Transcriptional regulator, AbrB family n=2 Tax=Thioalkalivibrio RepID=L0DRW8_THIND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP48556.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_03222018_0_2um_scaffold_780_10
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8793..9089)
DNA (297bp) protein (99aa)
ABC transporter-related protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AJN1_NITEC
ABC transporter-like protein
Tax=RBG_16_Gallionellales_56_9_curated
RTP_03222018_0_2um_scaffold_780_11
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9127..10467)
DNA (1341bp) protein (447aa)
Putative transcriptional regulator with HTH domain n=1 Tax=Desulfobacter postgatei 2ac9 RepID=I5B282_9DELT
ATP-dependent DNA helicase
ATP-dependent DNA helicase {ECO:0000313|EMBL:AJF07629.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
RTP_03222018_0_2um_scaffold_780_12
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10519..10809)
DNA (291bp) protein (97aa)
Nucleotidyltransferase family protein n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YFU3_THIV6
nucleotidyltransferase family protein
Tax=GWD2_Desulfuromonadales_61_12_curated
RTP_03222018_0_2um_scaffold_780_13
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10834..11013)
DNA (180bp) protein (60aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2EHB8_9BACT
ABC transporter-like protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
RTP_03222018_0_2um_scaffold_780_14
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11015..11506)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-137-C09 RepID=UPI000380B17E
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_03222018_0_2um_scaffold_780_15
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11503..11808)
DNA (306bp) protein (102aa)
DNA polymerase, beta domain protein region n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0AAC0_ALKEH
DNA polymerase subunit beta
DNA polymerase, beta domain protein region {ECO:0000313|EMBL:ABI56217.1}; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
RTP_03222018_0_2um_scaffold_780_16
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13173..13595)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034A2BFF
PilT domain-containing protein
Tax=CG_Beta_01
RTP_03222018_0_2um_scaffold_780_17
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13583..13846)
DNA (264bp) protein (88aa)
Tax=CG_Beta_01
RTP_03222018_0_2um_scaffold_780_18
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14268..14777)
DNA (510bp) protein (170aa)
N-acetyltransferase GCN5 n=1 Tax=Thauera phenylacetica B4P RepID=N6YWC2_9RHOO
N-acetyltransferase GCN5 {ECO:0000313|EMBL:ENO98566.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
GCN5-like N-acetyltransferase
RTP_03222018_0_2um_scaffold_780_19
unknown

Not on your lists

14822..15034
DNA (213bp) protein (71aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_780_20
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15494..16369)
DNA (876bp) protein (292aa)
Teichoic acid translocation permease protein TagG n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4YU37_9PROT
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
sugar ABC transporter permease
RTP_03222018_0_2um_scaffold_780_21
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16366..16911)
DNA (546bp) protein (182aa)
rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:CAD84589.1}; EC=5.1.3.13 {ECO:0000313|EMBL:CAD84589.1};; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Pseudomonas tolaasii RepID=UPI00036734E0
RTP_03222018_0_2um_scaffold_780_22
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17225..18142)
DNA (918bp) protein (306aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q124Y0_POLSJ
RTP_03222018_0_2um_scaffold_780_23
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18139..18507)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T2E5_META2
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_03222018_0_2um_scaffold_780_24
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18494..19420)
DNA (927bp) protein (309aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:EGW22952.1}; EC=1.1.1.133 {ECO:0000313|EMBL:EGW22952.1};; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
dTDP-4-dehydrorhamnose reductase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IVU5_9GAMM
RTP_03222018_0_2um_scaffold_780_25

Not on your lists

comp(19417..20499)
DNA (1083bp) protein (361aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=uncultured bacterium RepID=K2DZ54_9BACT
spore coat protein
RTP_03222018_0_2um_scaffold_780_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20918..22255
DNA (1338bp) protein (446aa)
Oxidoreductase, FAD-binding, putative n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF98_THIDA
oxidoreductase, FAD-binding
Oxidoreductase, FAD-binding, putative {ECO:0000313|EMBL:AAZ98716.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_780_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22252..23307
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI000374E589
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98715.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_780_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23673..24293
DNA (621bp) protein (207aa)
phospholipid/glycerol acyltransferase id=12493265 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phospholipid/glycerol acyltransferase
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:AAZ98713.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_780_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24290..25078
DNA (789bp) protein (263aa)
glycosyl transferase family protein id=12493264 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
glycosyl transferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_780_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25075..25848
DNA (774bp) protein (258aa)
demethylmenaquinone methyltransferase (EC:2.1.1.-)
Methyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFA3_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 89 in total

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