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FFSP_062018_mid_0_1um_Hydrogenophilales_62_23

FFSP_062018_mid_0_1um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_62_23
In projects: FFSP_062018_mid_0_1um  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

(J)

Displaying items 101-150 of 800 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
FFSP_062018_mid_0_1um_scaffold_5267
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2353 bp 53.12 26.39 82.62
FFSP_062018_mid_0_1um_scaffold_5006
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 2468 bp 60.25 22.61 82.78
FFSP_062018_mid_0_1um_scaffold_7461
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1720 bp 58.72 23.37 82.85
FFSP_062018_mid_0_1um_scaffold_2324
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 4921 bp 63.87 22.50 82.85
FFSP_062018_mid_0_1um_scaffold_3931
Order: Hydrogenophilales (66.67%)
6 3099 bp 63.92 21.78 82.96
FFSP_062018_mid_0_1um_scaffold_1532
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (80%)
5 6911 bp 57.05 23.29 83.08
FFSP_062018_mid_0_1um_scaffold_1991
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 5629 bp 62.46 20.23 83.14
FFSP_062018_mid_0_1um_scaffold_7520
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1706 bp 64.36 15.30 83.18
FFSP_062018_mid_0_1um_scaffold_4137
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 2948 bp 52.58 16.33 83.24
FFSP_062018_mid_0_1um_scaffold_13234
Species: Thiobacillus denitrificans (100%)
1 1069 bp 61.09 21.47 83.35
FFSP_062018_mid_0_1um_scaffold_2618
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 4422 bp 64.52 24.90 83.45
FFSP_062018_mid_0_1um_scaffold_4903
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2508 bp 62.52 22.97 83.49
FFSP_062018_mid_0_1um_scaffold_8772
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1501 bp 62.16 17.19 83.74
FFSP_062018_mid_0_1um_scaffold_1551
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (90%)
10 6835 bp 61.71 27.74 83.79
FFSP_062018_mid_0_1um_scaffold_6583
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1917 bp 60.62 16.90 83.88
FFSP_062018_mid_0_1um_scaffold_2242
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 5065 bp 64.80 26.12 83.93
FFSP_062018_mid_0_1um_scaffold_7141
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1783 bp 63.60 20.86 83.96
FFSP_062018_mid_0_1um_scaffold_625
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (78.57%)
14 12241 bp 62.10 24.68 84.01
FFSP_062018_mid_0_1um_scaffold_11447
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1204 bp 59.14 25.91 84.22
FFSP_062018_mid_0_1um_scaffold_6215
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 2018 bp 62.69 20.52 84.29
FFSP_062018_mid_0_1um_scaffold_3852
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 3151 bp 61.19 21.71 84.35
FFSP_062018_mid_0_1um_scaffold_2107
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
7 5341 bp 60.64 26.91 84.37
FFSP_062018_mid_0_1um_scaffold_7103
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1791 bp 66.95 21.61 84.42
FFSP_062018_mid_0_1um_scaffold_5376
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 2299 bp 60.77 23.81 84.43
FFSP_062018_mid_0_1um_scaffold_3735
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 3237 bp 61.51 24.84 84.52
FFSP_062018_mid_0_1um_scaffold_10517
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1290 bp 60.16 16.74 84.65
FFSP_062018_mid_0_1um_scaffold_1397
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 7397 bp 65.32 23.12 84.97
FFSP_062018_mid_0_1um_scaffold_4752
Species: Thiobacillus denitrificans (50%)
2 2577 bp 65.11 23.40 84.98
FFSP_062018_mid_0_1um_scaffold_3760
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
6 3215 bp 55.77 20.34 85.01
FFSP_062018_mid_0_1um_scaffold_11163
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1228 bp 59.36 21.01 85.02
FFSP_062018_mid_0_1um_scaffold_3113
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 3794 bp 58.86 21.19 85.08
FFSP_062018_mid_0_1um_scaffold_3537
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 3398 bp 64.57 22.87 85.11
FFSP_062018_mid_0_1um_scaffold_9529
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1399 bp 64.62 19.51 85.13
FFSP_062018_mid_0_1um_scaffold_11419
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1206 bp 63.68 16.92 85.32
FFSP_062018_mid_0_1um_scaffold_4141
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2942 bp 64.51 23.81 85.35
FFSP_062018_mid_0_1um_scaffold_8964
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1473 bp 62.86 19.55 85.54
FFSP_062018_mid_0_1um_scaffold_12247
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 1136 bp 57.22 20.86 85.56
FFSP_062018_mid_0_1um_scaffold_3042
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (85.71%)
7 3891 bp 59.68 24.98 85.58
FFSP_062018_mid_0_1um_scaffold_1612
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (90%)
10 6615 bp 53.64 22.49 85.67
FFSP_062018_mid_0_1um_scaffold_4127
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2952 bp 63.21 20.73 85.67
FFSP_062018_mid_0_1um_scaffold_7672
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1676 bp 61.69 24.70 85.74
FFSP_062018_mid_0_1um_scaffold_5873
Order: Hydrogenophilales (66.67%)
3 2128 bp 58.74 20.02 85.86
FFSP_062018_mid_0_1um_scaffold_2797
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (57.14%)
7 4191 bp 62.92 23.62 85.97
FFSP_062018_mid_0_1um_scaffold_3928
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 3099 bp 63.86 22.56 86.06
FFSP_062018_mid_0_1um_scaffold_5469
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 2268 bp 57.76 20.90 86.11
FFSP_062018_mid_0_1um_scaffold_4101
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 2968 bp 59.37 24.36 86.12
FFSP_062018_mid_0_1um_scaffold_2374
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
10 4840 bp 57.27 17.42 86.16
FFSP_062018_mid_0_1um_scaffold_3423
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3500 bp 53.83 24.90 86.23
FFSP_062018_mid_0_1um_scaffold_1469
Order: Hydrogenophilales (81.82%)
11 7138 bp 62.80 23.26 86.24
FFSP_062018_mid_0_1um_scaffold_1474
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 7096 bp 61.27 21.77 86.58
Displaying items 101-150 of 800 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.