ggKbase home page

FFSP_062018_mid_0_1um_Hydrogenophilales_62_23

FFSP_062018_mid_0_1um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_62_23
In projects: FFSP_062018_mid_0_1um  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

(J)

Displaying items 151-200 of 800 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
FFSP_062018_mid_0_1um_scaffold_11619
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1188 bp 60.61 15.66 86.62
FFSP_062018_mid_0_1um_scaffold_2823
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 4162 bp 60.40 21.98 86.64
FFSP_062018_mid_0_1um_scaffold_9565
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1395 bp 66.74 14.84 86.67
FFSP_062018_mid_0_1um_scaffold_3676
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 3285 bp 64.96 20.55 86.76
FFSP_062018_mid_0_1um_scaffold_8953
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 1474 bp 64.86 17.10 86.84
FFSP_062018_mid_0_1um_scaffold_1849
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (85.71%)
7 5981 bp 61.58 25.15 86.88
FFSP_062018_mid_0_1um_scaffold_14275
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1008 bp 57.84 22.32 86.90
FFSP_062018_mid_0_1um_scaffold_5548
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 2239 bp 62.89 25.86 86.96
FFSP_062018_mid_0_1um_scaffold_3217
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 3693 bp 62.06 23.56 87.00
FFSP_062018_mid_0_1um_scaffold_6083
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2058 bp 59.04 14.72 87.03
FFSP_062018_mid_0_1um_scaffold_4065
Order: Hydrogenophilales (100%)
3 2997 bp 65.87 21.82 87.09
FFSP_062018_mid_0_1um_scaffold_5748
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2170 bp 60.92 25.44 87.10
FFSP_062018_mid_0_1um_scaffold_1770
Order: Hydrogenophilales (88.89%)
9 6167 bp 55.96 30.11 87.14
FFSP_062018_mid_0_1um_scaffold_9731
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1376 bp 65.26 20.17 87.21
FFSP_062018_mid_0_1um_scaffold_9409
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1417 bp 66.06 23.29 87.23
FFSP_062018_mid_0_1um_scaffold_3172
Order: Hydrogenophilales (50%)
4 3746 bp 63.05 17.82 87.29
FFSP_062018_mid_0_1um_scaffold_3605
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 3341 bp 62.68 20.34 87.46
FFSP_062018_mid_0_1um_scaffold_2582
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 4471 bp 59.72 24.79 87.50
FFSP_062018_mid_0_1um_scaffold_8066
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1607 bp 59.74 23.90 87.55
FFSP_062018_mid_0_1um_scaffold_2627
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 4405 bp 61.25 19.48 87.58
FFSP_062018_mid_0_1um_scaffold_8109
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1599 bp 59.97 13.51 87.62
FFSP_062018_mid_0_1um_scaffold_13402
Species: Thiobacillus denitrificans (50%)
2 1058 bp 66.64 16.16 87.62
FFSP_062018_mid_0_1um_scaffold_12117
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1147 bp 61.81 18.18 87.62
FFSP_062018_mid_0_1um_scaffold_2808
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
8 4179 bp 48.48 25.41 87.87
FFSP_062018_mid_0_1um_scaffold_13175
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1072 bp 58.40 23.51 87.87
FFSP_062018_mid_0_1um_scaffold_1277
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
10 7831 bp 62.16 24.56 87.92
FFSP_062018_mid_0_1um_scaffold_11441
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1204 bp 64.04 23.67 87.96
FFSP_062018_mid_0_1um_scaffold_3225
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3683 bp 63.94 25.82 87.97
FFSP_062018_mid_0_1um_scaffold_2295
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 4967 bp 62.96 23.19 88.00
FFSP_062018_mid_0_1um_scaffold_10655
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1274 bp 62.56 29.79 88.07
FFSP_062018_mid_0_1um_scaffold_9202
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1440 bp 62.64 14.17 88.13
FFSP_062018_mid_0_1um_scaffold_12901
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1092 bp 63.83 20.88 88.19
FFSP_062018_mid_0_1um_scaffold_7666
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1677 bp 64.28 25.31 88.19
FFSP_062018_mid_0_1um_scaffold_2844
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 4117 bp 63.20 22.52 88.24
FFSP_062018_mid_0_1um_scaffold_3716
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 3252 bp 62.12 19.97 88.28
FFSP_062018_mid_0_1um_scaffold_9633
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1386 bp 62.27 21.00 88.31
FFSP_062018_mid_0_1um_scaffold_3764
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 3212 bp 62.89 26.71 88.36
FFSP_062018_mid_0_1um_scaffold_3787
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3201 bp 61.51 23.90 88.38
FFSP_062018_mid_0_1um_scaffold_3750
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 3224 bp 60.79 26.15 88.49
FFSP_062018_mid_0_1um_scaffold_3631
Order: Hydrogenophilales (66.67%)
3 3325 bp 57.20 12.68 88.51
FFSP_062018_mid_0_1um_scaffold_4866
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 2521 bp 58.39 21.72 88.54
FFSP_062018_mid_0_1um_scaffold_7686
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1673 bp 62.04 19.19 88.58
FFSP_062018_mid_0_1um_scaffold_2959
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3975 bp 58.31 24.64 88.60
FFSP_062018_mid_0_1um_scaffold_3412
Order: Hydrogenophilales (60%)
5 3511 bp 61.66 22.98 88.61
FFSP_062018_mid_0_1um_scaffold_7132
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1784 bp 62.56 19.67 88.62
FFSP_062018_mid_0_1um_scaffold_2467
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 4668 bp 52.59 25.84 88.62
FFSP_062018_mid_0_1um_scaffold_8596
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 1526 bp 61.27 19.07 88.66
FFSP_062018_mid_0_1um_scaffold_7406
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1731 bp 65.63 21.92 88.73
FFSP_062018_mid_0_1um_scaffold_5182
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2393 bp 60.18 22.06 88.76
FFSP_062018_mid_0_1um_scaffold_5814
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 2146 bp 58.34 25.72 88.77
Displaying items 151-200 of 800 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.