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FFSP_062018_mid_0_1um_Hydrogenophilales_62_23

FFSP_062018_mid_0_1um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_62_23
In projects: FFSP_062018_mid_0_1um  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

(J)

Displaying items 151-200 of 800 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
FFSP_062018_mid_0_1um_scaffold_3003
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 3931 bp 65.28 25.18 89.88
FFSP_062018_mid_0_1um_scaffold_1800
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 6088 bp 66.23 25.18 98.26
FFSP_062018_mid_0_1um_scaffold_1641
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (71.43%)
7 6521 bp 65.94 25.16 98.91
FFSP_062018_mid_0_1um_scaffold_2504
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
6 4603 bp 65.70 25.16 95.29
FFSP_062018_mid_0_1um_scaffold_5140
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 2410 bp 64.73 25.15 98.46
FFSP_062018_mid_0_1um_scaffold_1849
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (85.71%)
7 5981 bp 61.58 25.15 86.88
FFSP_062018_mid_0_1um_scaffold_1464
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (87.5%)
8 7159 bp 58.67 25.14 94.08
FFSP_062018_mid_0_1um_scaffold_3887
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3128 bp 65.47 25.13 95.04
FFSP_062018_mid_0_1um_scaffold_2967
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 3969 bp 63.87 25.09 98.87
FFSP_062018_mid_0_1um_scaffold_1356
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 7503 bp 60.80 25.07 94.72
FFSP_062018_mid_0_1um_scaffold_4920
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2501 bp 64.21 25.07 97.28
FFSP_062018_mid_0_1um_scaffold_485
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (88.24%)
17 14189 bp 57.97 25.07 93.43
FFSP_062018_mid_0_1um_scaffold_589
Species: GWE1_Thiobacillus_62_9_curated (53.33%)
15 12708 bp 65.68 25.05 96.03
FFSP_062018_mid_0_1um_scaffold_520
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (92.86%)
14 13613 bp 61.19 25.03 90.09
FFSP_062018_mid_0_1um_scaffold_1212
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
9 8093 bp 58.03 25.02 98.02
FFSP_062018_mid_0_1um_scaffold_1417
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (71.43%)
7 7316 bp 64.60 25.01 93.62
FFSP_062018_mid_0_1um_scaffold_2537
Order: Hydrogenophilales (66.67%)
9 4540 bp 63.72 25.01 97.00
FFSP_062018_mid_0_1um_scaffold_4144
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2941 bp 60.76 24.99 92.93
FFSP_062018_mid_0_1um_scaffold_3042
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (85.71%)
7 3891 bp 59.68 24.98 85.58
FFSP_062018_mid_0_1um_scaffold_2586
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 4467 bp 60.96 24.98 89.86
FFSP_062018_mid_0_1um_scaffold_2932
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 4008 bp 66.29 24.96 90.94
FFSP_062018_mid_0_1um_scaffold_3945
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 3089 bp 59.83 24.96 99.26
FFSP_062018_mid_0_1um_scaffold_2618
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 4422 bp 64.52 24.90 83.45
FFSP_062018_mid_0_1um_scaffold_3423
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3500 bp 53.83 24.90 86.23
FFSP_062018_mid_0_1um_scaffold_8196
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 1585 bp 61.64 24.89 64.35
FFSP_062018_mid_0_1um_scaffold_5772
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 2158 bp 66.82 24.88 99.81
FFSP_062018_mid_0_1um_scaffold_5040
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2455 bp 64.56 24.87 99.84
FFSP_062018_mid_0_1um_scaffold_2661
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 4357 bp 62.93 24.86 90.27
FFSP_062018_mid_0_1um_scaffold_3735
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 3237 bp 61.51 24.84 84.52
FFSP_062018_mid_0_1um_scaffold_8293
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1571 bp 61.68 24.82 97.20
FFSP_062018_mid_0_1um_scaffold_5580
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2225 bp 62.74 24.81 92.90
FFSP_062018_mid_0_1um_scaffold_8275
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1573 bp 61.16 24.79 79.34
FFSP_062018_mid_0_1um_scaffold_2582
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 4471 bp 59.72 24.79 87.50
FFSP_062018_mid_0_1um_scaffold_3340
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 3582 bp 64.88 24.79 97.99
FFSP_062018_mid_0_1um_scaffold_2654
Order: Hydrogenophilales (60%)
5 4369 bp 64.09 24.79 90.84
FFSP_062018_mid_0_1um_scaffold_354
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
21 17372 bp 54.92 24.78 94.85
FFSP_062018_mid_0_1um_scaffold_1900
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (90%)
10 5846 bp 59.63 24.76 94.42
FFSP_062018_mid_0_1um_scaffold_2245
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 5054 bp 61.69 24.75 96.76
FFSP_062018_mid_0_1um_scaffold_2365
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 4854 bp 60.75 24.72 78.92
FFSP_062018_mid_0_1um_scaffold_7672
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1676 bp 61.69 24.70 85.74
FFSP_062018_mid_0_1um_scaffold_625
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (78.57%)
14 12241 bp 62.10 24.68 84.01
FFSP_062018_mid_0_1um_scaffold_11855
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1167 bp 59.81 24.68 77.38
FFSP_062018_mid_0_1um_scaffold_5037
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 2455 bp 56.90 24.68 66.84
FFSP_062018_mid_0_1um_scaffold_1892
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 5865 bp 64.88 24.65 95.40
FFSP_062018_mid_0_1um_scaffold_2959
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3975 bp 58.31 24.64 88.60
FFSP_062018_mid_0_1um_scaffold_534
Order: Hydrogenophilales (62.5%)
8 13373 bp 63.02 24.62 89.73
FFSP_062018_mid_0_1um_scaffold_11272
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1219 bp 64.23 24.61 94.75
FFSP_062018_mid_0_1um_scaffold_1277
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
10 7831 bp 62.16 24.56 87.92
FFSP_062018_mid_0_1um_scaffold_7080
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1796 bp 64.70 24.55 99.55
FFSP_062018_mid_0_1um_scaffold_5269
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2352 bp 62.50 24.55 96.94
Displaying items 151-200 of 800 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.