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RTP_092018_0_1um_scaffold_27

Search features with annotation key words

Displaying items 31-60 of 607 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_092018_0_1um_scaffold_27_31
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46280..46822)
DNA (543bp) protein (181aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13); K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] id=12494463 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_27_32
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46822..47739)
DNA (918bp) protein (306aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
glucose-1-phosphate thymidylyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00035FD75E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_27_33
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47742..48059)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T2E5_META2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE23585.1}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
RTP_092018_0_1um_scaffold_27_34
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48094..49173)
DNA (1080bp) protein (360aa)
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Thiobacillus thioparus RepID=UPI0003602592
RTP_092018_0_1um_scaffold_27_35
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49269..50237)
DNA (969bp) protein (323aa)
GDP-L-fucose synthetase id=1295753 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
GDP-L-fucose synthetase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_27_36
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50273..50995)
DNA (723bp) protein (241aa)
Putative uncharacterized protein id=2000189 bin=GWD2_Desulfuromonadales_54_10 species=Shewanella benthica genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
nucleotidyltransferase substrate binding protein
Tax=GWD2_Desulfuromonadales_54_10_curated
RTP_092018_0_1um_scaffold_27_37
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50999..51433)
DNA (435bp) protein (145aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=335543 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
twitching motility protein PilT n=1 Tax=Leucothrix mucor RepID=UPI0003B4E34A
PilT domain-containing protein
RTP_092018_0_1um_scaffold_27_38
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51430..51699)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B67027
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP47375.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_092018_0_1um_scaffold_27_39
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51852..52133)
DNA (282bp) protein (94aa)
Uncharacterized protein n=2 Tax=Methylomicrobium RepID=G4T4B9_META2
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_092018_0_1um_scaffold_27_40
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52130..52249)
DNA (120bp) protein (40aa)
hypothetical protein n=1 Tax=Methylomicrobium buryatense RepID=UPI00037B3785
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_092018_0_1um_scaffold_27_41
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52530..53615)
DNA (1086bp) protein (362aa)
GDP-mannose 4,6-dehydratase id=1295752 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
GDP-mannose 4,6-dehydratase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_27_42
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53804..54229)
DNA (426bp) protein (142aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
transcriptional regulator n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036064FB
PilT protein domain-containing protein
RTP_092018_0_1um_scaffold_27_43
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54226..54465)
DNA (240bp) protein (80aa)
SpoVT/AbrB like domain protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JTK2_9GAMM
SpoVT/AbrB like domain-containing protein
SpoVT/AbrB like domain protein {ECO:0000313|EMBL:AEM47853.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
RTP_092018_0_1um_scaffold_27_44
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54849..55118
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZJK3_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:KIN88956.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
CopG/Arc/MetJ family addiction module antidote protein
RTP_092018_0_1um_scaffold_27_45
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55417..55746)
DNA (330bp) protein (110aa)
Putative transcriptional regulator n=1 Tax=Azoarcus sp. KH32C RepID=H0PZW3_9RHOO
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:BAL25601.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
RTP_092018_0_1um_scaffold_27_46
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55743..55937)
DNA (195bp) protein (65aa)
addiction module killer protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00037B335A
addiction module killer protein
Addiction module killer protein {ECO:0000313|EMBL:BAP88177.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
RTP_092018_0_1um_scaffold_27_47
unknown

Not on your lists

55972..56625
DNA (654bp) protein (218aa)

This feature has no annotations

RTP_092018_0_1um_scaffold_27_48
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56606..57889)
DNA (1284bp) protein (428aa)
UDP-N-acetyl-D-galactosamine dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI0003813DD9
nucleotide sugar dehydrogenase
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:AFL74128.1}; Flags: Precursor;; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
RTP_092018_0_1um_scaffold_27_49
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58012..58593)
DNA (582bp) protein (194aa)
serine O-acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI000381BA2E
RTP_092018_0_1um_scaffold_27_50
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58655..59134)
DNA (480bp) protein (160aa)
pssE; polysaccharide biosynthesis glucuronosyltransferase (EC:2.4.1.141)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI0002D85284
Beta-1,4-galactosyltransferase CpsIVG {ECO:0000313|EMBL:AKF07164.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
RTP_092018_0_1um_scaffold_27_51
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59131..59580)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI0002DC4C4F
Glycosyl transferase {ECO:0000313|EMBL:KGT79238.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase
RTP_092018_0_1um_scaffold_27_52
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59577..60677)
DNA (1101bp) protein (367aa)
Glycosyl transferase, group 1 family protein n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60CF3_METCA
glycosyl transferase family protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
RTP_092018_0_1um_scaffold_27_53
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60674..61150)
DNA (477bp) protein (159aa)
Putative hexapeptide transferase family protein n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T876_BURPP
hexapeptide transferase family protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
RTP_092018_0_1um_scaffold_27_54
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61147..62706)
DNA (1560bp) protein (520aa)
Putative membrane protein n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60CF4_METCA
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AAU90603.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
RTP_092018_0_1um_scaffold_27_55
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62703..63959)
DNA (1257bp) protein (419aa)
Glycosyl transferase, group 1 family protein n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60CF5_METCA
glycosyl transferase family protein
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:AAU90612.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
RTP_092018_0_1um_scaffold_27_56
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63960..65450)
DNA (1491bp) protein (497aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHZ0_THIDA
Uncharacterized protein {ECO:0000313|EMBL:KIO49448.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
RTP_092018_0_1um_scaffold_27_57
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65494..66279)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PMG5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KIO49449.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
RTP_092018_0_1um_scaffold_27_58
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66323..67018)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035CC46A
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_27_59
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67043..67936)
DNA (894bp) protein (298aa)
exosortase 2 n=1 Tax=Thiobacillus thioparus RepID=UPI0003733062
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_27_60
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67941..68834)
DNA (894bp) protein (298aa)
chain-length determining protein n=1 Tax=Thiobacillus thioparus RepID=UPI000378DABD
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 31-60 of 607 in total

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