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FFSP_072018_bottom_0_1um_scaffold_492

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_072018_bottom_0_1um_scaffold_492_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..171)
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003644CFC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_492_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(276..1085)
DNA (810bp) protein (270aa)
ATP-binding ABC transporter protein id=1335690 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ATP-binding ABC transporter protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_492_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1088..2164)
DNA (1077bp) protein (359aa)
2-oxoglutarate dehydrogenase E2 (EC:2.3.1.61)
dihydrolipoamide succinyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003823152
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_492_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2154..4814)
DNA (2661bp) protein (887aa)
sucA; 2-oxoglutarate dehydrogenase E1 (EC:1.2.4.2)
2-oxoglutarate dehydrogenase E1 n=1 Tax=Thiobacillus thioparus RepID=UPI000382C67B
2-oxoglutarate dehydrogenase, E1 component {ECO:0000313|EMBL:AAZ97141.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_492_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4869..6164)
DNA (1296bp) protein (432aa)
citrate synthase (EC:2.3.3.1)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Citrate synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SEX3_THIDA
FFSP_072018_bottom_0_1um_scaffold_492_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6408..7103)
DNA (696bp) protein (232aa)
succinate dehydrogenase subunit B (EC:1.3.5.1)
succinate dehydrogenase iron-sulfur subunit n=1 Tax=Thiobacillus thioparus RepID=UPI000366FC98
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_492_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7281..8813)
DNA (1533bp) protein (511aa)
succinate dehydrogenase subunit A (EC:1.3.5.1)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
succinate dehydrogenase flavoprotein subunit n=1 Tax=Thiobacillus thioparus RepID=UPI0003760C49
FFSP_072018_bottom_0_1um_scaffold_492_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8810..9154)
DNA (345bp) protein (115aa)
succinate dehydrogenase subunit D (EC:1.3.5.1)
Succinate dehydrogenase, cytochrome b subunit id=1374742 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_492_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9151..9531)
DNA (381bp) protein (127aa)
succinate dehydrogenase subunit C (EC:1.3.5.1)
Succinate dehydrogenase cytochrome b-556 subunit id=1374741 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_492_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9561..10790)
DNA (1230bp) protein (410aa)
malate dehydrogenase (EC:1.1.1.40)
malate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI000366945B
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_492_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10881..11603)
DNA (723bp) protein (241aa)
RNA polymerase sigma-70 factor; K02405 RNA polymerase sigma factor for flagellar operon FliA id=12495352 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RNA polymerase sigma-70 factor
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_492_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11621..12277)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000360C5ED
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_492_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12267..13403)
DNA (1137bp) protein (379aa)
Flagellar biosynthetic protein FlhF id=1374737 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar biosynthetic protein FlhF
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_492_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13400..15475)
DNA (2076bp) protein (692aa)
flagellar biosynthesis protein FlhA n=1 Tax=Thiobacillus denitrificans RepID=UPI0003726BF3
flagellar biosynthesis protein FlhA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_492_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15472..16242)
DNA (771bp) protein (257aa)
flagellar biosynthetic protein FlhB; K02401 flagellar biosynthetic protein FlhB id=12495356 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
flagellar biosynthetic protein FlhB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_492_16
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16361..16633)
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IX14_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGW23369.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
hypothetical protein
FFSP_072018_bottom_0_1um_scaffold_492_17
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(16635..17678)
DNA (1044bp) protein (348aa)
RNA 3'-phosphate cyclase (EC:6.5.1.4)
ribosomal subunit interface protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000379C72D
Tax=RBG_16_Nitrospirae_64_22_curated
FFSP_072018_bottom_0_1um_scaffold_492_18
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17762..20146)
DNA (2385bp) protein (795aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
phosphoketolase (EC:4.1.2.9)
Probable phosphoketolase n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A259_METMM
FFSP_072018_bottom_0_1um_scaffold_492_19
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20207..21394)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI0003645E5B
acetate kinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
FFSP_072018_bottom_0_1um_scaffold_492_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21544..22812)
DNA (1269bp) protein (423aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|SAAS:SAAS00015083}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|SAAS:SAAS00015083};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Glucose-1-phosphate adenylyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHV5_9PROT
glgC; glucose-1-phosphate adenylyltransferase
FFSP_072018_bottom_0_1um_scaffold_492_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22896..25013
DNA (2118bp) protein (706aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Glycogen debranching enzyme n=1 Tax=Nitrosospira sp. APG3 RepID=M5DRN1_9PROT
glycogen debranching protein
FFSP_072018_bottom_0_1um_scaffold_492_22
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25010..26329
DNA (1320bp) protein (440aa)
Oxidoreductase FAD/NAD(P)-binding domain protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C2C8_NITHN
oxidoreductase FAD/NAD(P)-binding domain-containing protein
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:ADE14787.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
FFSP_072018_bottom_0_1um_scaffold_492_23
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26339..26755
DNA (417bp) protein (139aa)
Peptidoglycan-binding LysM n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C2C7_NITHN
peptidoglycan-binding LysM
Tax=RBG_16_Gammaproteobacteria_57_12_curated
FFSP_072018_bottom_0_1um_scaffold_492_24
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26719..27015)
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZHG8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDW96489.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein
FFSP_072018_bottom_0_1um_scaffold_492_25
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27017..27481
DNA (465bp) protein (155aa)
ycjT_[C]; Trehalose-6-phosphate phosphatase (EC:3.1.3.12)
Trehalose-6-phosphate phosphatase {ECO:0000313|EMBL:AGA32775.1}; EC=3.1.3.12 {ECO:0000313|EMBL:AGA32775.1};; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003775090
FFSP_072018_bottom_0_1um_scaffold_492_26
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27529..27987
DNA (459bp) protein (153aa)
Transposase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BMR3_9GAMM
ISL3 family transposase
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
FFSP_072018_bottom_0_1um_scaffold_492_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28009..28170)
DNA (162bp) protein (54aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000364547A
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_492_28
unknown

Not on your lists

comp(28210..28299)
DNA (90bp) protein (30aa)
hypothetical protein
Displaying 28 items

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