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RTP_03222018_0_2um_scaffold_3479

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_3479_1

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comp(3..1016)
DNA (1014bp) protein (338aa)
Argininosuccinate lyase (Arginosuccinase) (ASAL) {ECO:0000313|EMBL:CBI10146.1}; EC=4.3.2.1 {ECO:0000313|EMBL:CBI10146.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
argininosuccinate lyase (EC:4.3.2.1)
argininosuccinate lyase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037670D5
RTP_03222018_0_2um_scaffold_3479_2
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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1064..2080
DNA (1017bp) protein (339aa)
Two-component system sensor ATPase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AB94_9PROT
Histidine kinase {ECO:0000313|EMBL:GAO36459.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
two-component system sensor ATPase
RTP_03222018_0_2um_scaffold_3479_3
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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2077..2823
DNA (747bp) protein (249aa)
Alginate biosynthesis regulatory protein AlgR n=1 Tax=Thauera sp. 63 RepID=N6Y206_9RHOO
Transcriptional regulator {ECO:0000313|EMBL:GAO36460.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
LytTR family transcriptional regulator
RTP_03222018_0_2um_scaffold_3479_4
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2832..3275)
DNA (444bp) protein (148aa)
cyanate hydratase (EC:4.2.1.104); K01725 cyanate lyase [EC:4.2.1.104] id=12496318 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Cyanate hydratase {ECO:0000256|HAMAP-Rule:MF_00535}; Short=Cyanase {ECO:0000256|HAMAP-Rule:MF_00535};; EC=4.2.1.104 {ECO:0000256|HAMAP-Rule:MF_00535};; Cyanate hydrolase {ECO:0000256|HAMAP-Rule:MF_00535}; Cyanate lyase {ECO:0000256|HAMAP-Rule:MF_00535}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
cyanate hydratase (EC:4.2.1.104)
RTP_03222018_0_2um_scaffold_3479_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3718..4194)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003666D9E
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_3479_6
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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4280..5221
DNA (942bp) protein (314aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
porphobilinogen deaminase (EC:2.5.1.61)
porphobilinogen deaminase n=1 Tax=Aquaspirillum serpens RepID=UPI0003B4C3A6
RTP_03222018_0_2um_scaffold_3479_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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5218..5994
DNA (777bp) protein (259aa)
uroporphyrinogen-III synthase (EC:4.2.1.75)
Uroporphyrinogen-III synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHB2_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
RTP_03222018_0_2um_scaffold_3479_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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5987..7003
DNA (1017bp) protein (339aa)
Uroporphyrin-III C-methyltransferase HemX n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AB90_9PROT
uroporphyrin-III C-methyltransferase HemX
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_03222018_0_2um_scaffold_3479_9
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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7003..7413
DNA (411bp) protein (137aa)
HemY domain protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ANW5_9PROT
HemY domain protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
RTP_03222018_0_2um_scaffold_3479_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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7618..9198
DNA (1581bp) protein (527aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKW8_9PROT
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:CCU63542.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
RTP_03222018_0_2um_scaffold_3479_11

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comp(9300..9521)
DNA (222bp) protein (74aa)
ATP-dependent DNA helicase Rep {ECO:0000313|EMBL:CBI10967.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBI10967.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ATP-dependent DNA helicase Rep (EC:3.6.1.-)
ATP-dependent DNA helicase Rep n=1 Tax=mine drainage metagenome RepID=E6QUP4_9ZZZZ
Displaying 11 items

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