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RTP_02272018_0_2um_scaffold_962

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_962_1
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..172)
DNA (171bp) protein (57aa)
dapA1; dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Thauera sp. 63 RepID=N6X7H8_9RHOO
RTP_02272018_0_2um_scaffold_962_2

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254..1300
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QQV8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09629.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
diguanylate cyclase with GAF sensor
RTP_02272018_0_2um_scaffold_962_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1291..2094
DNA (804bp) protein (268aa)
Segregation and condensation protein A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFM3_9PROT
Segregation and condensation protein A {ECO:0000256|SAAS:SAAS00093938, ECO:0000313|EMBL:KIO48270.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
scpA/B family protein
RTP_02272018_0_2um_scaffold_962_4

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2091..3569
DNA (1479bp) protein (493aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QPV3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09274.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_02272018_0_2um_scaffold_962_5

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3734..4117
DNA (384bp) protein (128aa)
Protein crcB homolog n=1 Tax=mine drainage metagenome RepID=E6QPV1_9ZZZZ
Protein crcB homolog {ECO:0000313|EMBL:CBI09272.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
CrcB protein
RTP_02272018_0_2um_scaffold_962_6

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4120..4431
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QPV0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09271.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_962_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4431..5180
DNA (750bp) protein (250aa)
permease n=1 Tax=Thiobacillus denitrificans RepID=UPI000376458D
hypothetical protein
Uncharacterized conserved membrane protein {ECO:0000313|EMBL:AAZ96991.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_962_8

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5184..5843
DNA (660bp) protein (220aa)
Putative integral membrane protein n=1 Tax=mine drainage metagenome RepID=E6QPU9_9ZZZZ
Putative integral membrane protein {ECO:0000313|EMBL:CBI09270.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative integral membrane protein
RTP_02272018_0_2um_scaffold_962_9

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5840..9571
DNA (3732bp) protein (1244aa)
ATP-dependent RNA helicase hrpA {ECO:0000313|EMBL:CBI09269.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBI09269.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ATP-dependent RNA helicase hrpA n=1 Tax=mine drainage metagenome RepID=E6QPU8_9ZZZZ
ATP-dependent helicase HrpA
RTP_02272018_0_2um_scaffold_962_10

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comp(9665..10675)
DNA (1011bp) protein (337aa)
Putative outer membrane protein OmpA (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6QPU7_9ZZZZ
Putative outer membrane protein OmpA (Modular protein) {ECO:0000313|EMBL:CBI09268.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_962_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10764..11315)
DNA (552bp) protein (184aa)
molybdenum cofactor biosynthesis protein MogA n=1 Tax=Thiobacillus thioparus RepID=UPI000363460F
mogA; molybdenum cofactor biosynthesis protein MogA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_962_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11340..12716)
DNA (1377bp) protein (459aa)
phosphomannomutase (EC:5.4.2.8)
phosphoglucomutase n=1 Tax=Thiobacillus thioparus RepID=UPI000366740E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_962_13

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comp(12756..13718)
DNA (963bp) protein (321aa)
Putative alpha/beta hydrolase, YheT type n=1 Tax=mine drainage metagenome RepID=E6QQX4_9ZZZZ
Putative alpha/beta hydrolase, YheT type {ECO:0000313|EMBL:CBI09645.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
alpha/beta hydrolase
RTP_02272018_0_2um_scaffold_962_14
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

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13791..14318
DNA (528bp) protein (176aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC id=2139060 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_02272018_0_2um_scaffold_962_15
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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14326..14904
DNA (579bp) protein (193aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
Holliday junction DNA helicase RuvA n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI000370EB59
ruvA; Holliday junction DNA helicase RuvA
RTP_02272018_0_2um_scaffold_962_16

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14901..15929
DNA (1029bp) protein (343aa)
Holliday junction DNA helicase ruvB n=1 Tax=mine drainage metagenome RepID=E6QQX1_9ZZZZ
Holliday junction DNA helicase ruvB {ECO:0000313|EMBL:CBI09642.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Holliday junction DNA helicase RuvB
RTP_02272018_0_2um_scaffold_962_17
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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15922..16323
DNA (402bp) protein (134aa)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XEQ2_METNJ
4-hydroxybenzoyl-CoA thioesterase
Methylophaga nitratireducenticrescens strain JAM1, complete genome {ECO:0000313|EMBL:AFI82871.1}; TaxID=754476 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM; 25689 / JAM1).;"
RTP_02272018_0_2um_scaffold_962_18
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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16358..17011
DNA (654bp) protein (218aa)
MotA/TolQ/ExbB proton channel family protein; K03562 biopolymer transport protein TolQ id=12496613 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
protein TolQ
Tax=GWA2_Gallionellales_60_18_curated
RTP_02272018_0_2um_scaffold_962_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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17008..17430
DNA (423bp) protein (141aa)
Tol biopolymer transport system, TolR protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFF6_9PROT
Tol biopolymer transport system, TolR protein {ECO:0000313|EMBL:CCU61881.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
biopolymer transport protein ExbD/TolR
RTP_02272018_0_2um_scaffold_962_20

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17430..18284
DNA (855bp) protein (285aa)
Putative Periplasmic protein TonB n=1 Tax=mine drainage metagenome RepID=E6QQW6_9ZZZZ
Putative Periplasmic protein TonB {ECO:0000313|EMBL:CBI09637.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
protein TolA
RTP_02272018_0_2um_scaffold_962_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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18284..19552
DNA (1269bp) protein (423aa)
Protein TolB n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABB2_9PROT
tolB; translocation protein TolB
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_02272018_0_2um_scaffold_962_22

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19597..20193
DNA (597bp) protein (199aa)
Peptidoglycan-associated lipoprotein (19 kDa surface antigen) (PPL) n=1 Tax=mine drainage metagenome RepID=E6QQW3_9ZZZZ
Peptidoglycan-associated lipoprotein (19 kDa surface antigen) (PPL) {ECO:0000313|EMBL:CBI09634.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peptidoglycan-associated lipoprotein
RTP_02272018_0_2um_scaffold_962_23
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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20197..20979
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGT6_THIDA
Tol-pal system protein YbgF {ECO:0000313|EMBL:GAO35798.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
TPR repeat-containing protein
RTP_02272018_0_2um_scaffold_962_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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20979..21623
DNA (645bp) protein (215aa)
7-carboxy-7-deazaguanine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFF4_9PROT
radical activating enzyme
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_02272018_0_2um_scaffold_962_25
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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21624..21932
DNA (309bp) protein (103aa)
7-cyano-7-deazaguanine synthase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SCJ6_GALCS
exsB protein
Tax=GWA2_Gallionellales_60_18_curated
Displaying 25 items

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