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RTP_02272018_0_2um_scaffold_1055

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_1055_1
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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3..518
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AI23_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO37663.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1055_2
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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515..1210
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B7G3_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN36382.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_1055_3

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1220..1705
DNA (486bp) protein (162aa)
nucleotide-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036ECB09
Uncharacterized protein {ECO:0000313|EMBL:CBI10910.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nucleotide-binding protein
RTP_02272018_0_2um_scaffold_1055_4

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1778..2212
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QUI6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10909.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1055_5

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comp(2307..3476)
DNA (1170bp) protein (390aa)
Glycosyltransferase {ECO:0000313|EMBL:CBI10281.1}; EC=2.4.-.- {ECO:0000313|EMBL:CBI10281.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Glycosyltransferase n=1 Tax=mine drainage metagenome RepID=E6QSQ9_9ZZZZ
group 1 glycosyl transferase
RTP_02272018_0_2um_scaffold_1055_6
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

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3606..4199
DNA (594bp) protein (198aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TLK3_RICCO
Putative uncharacterized protein {ECO:0000313|EMBL:EEF23260.1}; Flags: Fragment;; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1055_7

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4229..5029
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QQZ1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09662.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1055_8

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comp(5033..6046)
DNA (1014bp) protein (338aa)
Putative O-sialoglycoprotein endopeptidase {ECO:0000313|EMBL:CBI11602.1}; EC=3.4.24.57 {ECO:0000313|EMBL:CBI11602.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative DNA-binding/iron metalloprotein/AP endonuclease (EC:3.4.24.57)
Putative O-sialoglycoprotein endopeptidase n=1 Tax=mine drainage metagenome RepID=E6QWH9_9ZZZZ
RTP_02272018_0_2um_scaffold_1055_9

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6184..6873
DNA (690bp) protein (230aa)
Phosphate regulon transcriptional regulatory protein phoB n=1 Tax=mine drainage metagenome RepID=E6QWH8_9ZZZZ
Phosphate regulon transcriptional regulatory protein phoB {ECO:0000313|EMBL:CBI11601.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
two component transcriptional regulator
RTP_02272018_0_2um_scaffold_1055_10

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6888..8216
DNA (1329bp) protein (443aa)
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.3.-)
Putative Phosphate regulon sensor protein phoR n=1 Tax=mine drainage metagenome RepID=E6QWH7_9ZZZZ
Putative Phosphate regulon sensor protein phoR {ECO:0000313|EMBL:CBI11600.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_02272018_0_2um_scaffold_1055_11
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8176..8589)
DNA (414bp) protein (138aa)
HIT family hydrolase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003789788
histidine triad (HIT) protein
Histidine triad (HIT) protein {ECO:0000313|EMBL:ABE50771.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
RTP_02272018_0_2um_scaffold_1055_12

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comp(8610..9215)
DNA (606bp) protein (202aa)
Recombination protein RecR n=1 Tax=mine drainage metagenome RepID=E6QWH5_9ZZZZ
Recombination protein RecR {ECO:0000313|EMBL:CBI11598.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
recR; recombination protein RecR
RTP_02272018_0_2um_scaffold_1055_13
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9223..9549)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000376E5D0
Nucleoid-associated protein HR51_32105 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1055_14
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9554..11224)
DNA (1671bp) protein (557aa)
DNA-directed DNA polymerase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B3W5_9PROT
dnaX; DNA-directed DNA polymerase
DNA-directed DNA polymerase {ECO:0000313|EMBL:BAN35332.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_1055_15

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11363..11575
DNA (213bp) protein (71aa)
30S ribosomal subunit protein S21 n=1 Tax=mine drainage metagenome RepID=E6QWH2_9ZZZZ
30S ribosomal subunit protein S21 {ECO:0000313|EMBL:CBI11595.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S21
RTP_02272018_0_2um_scaffold_1055_16

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11597..12043
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QWH1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11594.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1055_17

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12121..13827
DNA (1707bp) protein (569aa)
DNA primase {ECO:0000313|EMBL:CBI11592.1}; EC=2.7.7.- {ECO:0000313|EMBL:CBI11592.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA primase n=1 Tax=mine drainage metagenome RepID=E6QWG9_9ZZZZ
DNA primase
RTP_02272018_0_2um_scaffold_1055_18

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13954..15858
DNA (1905bp) protein (635aa)
RNA polymerase sigma factor rpoD (Sigma-70) n=1 Tax=mine drainage metagenome RepID=E6QWG8_9ZZZZ
RNA polymerase sigma factor rpoD (Sigma-70) {ECO:0000313|EMBL:CBI11591.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RNA polymerase sigma factor RpoD
RTP_02272018_0_2um_scaffold_1055_trna_1
unknown

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15904..15977
DNA (74bp)
transferRNA Met
RTP_02272018_0_2um_scaffold_1055_19

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16074..17735
DNA (1662bp) protein (554aa)
Putative ABC transporter, ATP-binding protein n=1 Tax=mine drainage metagenome RepID=E6QXG3_9ZZZZ
Putative ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CBI11937.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ABC transporter
RTP_02272018_0_2um_scaffold_1055_20
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18141..18761
DNA (621bp) protein (207aa)
LemA family protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AL75_9PROT
LemA family protein
LemA family protein {ECO:0000313|EMBL:BAN35414.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Displaying 21 items

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