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RTP_02272018_0_2um_scaffold_1523

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_1523_1
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..217)
DNA (216bp) protein (72aa)
regulatory protein n=1 Tax=Methylophilus RepID=UPI00037AA93B
glutamine amidotransferase, class-II
Glutamine amidotransferase, class-II {ECO:0000313|EMBL:ABE50044.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
RTP_02272018_0_2um_scaffold_1523_2
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(304..1530)
DNA (1227bp) protein (409aa)
Formamidase n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QK58_METS6
Formamidase {ECO:0000313|EMBL:KFZ89903.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
formamidase
RTP_02272018_0_2um_scaffold_1523_3
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1909..2913
DNA (1005bp) protein (335aa)
Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein {ECO:0000313|EMBL:CDS52828.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
NlpA lipoprotein id=1279047 bin=GWE1_Burkholderiales_65_30 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
NlpA lipoprotein
RTP_02272018_0_2um_scaffold_1523_4

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2968..3987
DNA (1020bp) protein (340aa)
Putative fatty acid desaturase n=1 Tax=mine drainage metagenome RepID=E6PK38_9ZZZZ
Putative fatty acid desaturase {ECO:0000313|EMBL:CBH95289.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative fatty acid desaturase
RTP_02272018_0_2um_scaffold_1523_5
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3989..4348
DNA (360bp) protein (120aa)
putative 3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100)
Putative 3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:CAZ90233.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CAZ90233.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative 3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNV5_THIA3
RTP_02272018_0_2um_scaffold_1523_6
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4345..5094
DNA (750bp) protein (250aa)
putative 3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100)
Putative 3-oxoacyl-[acyl-carrier-protein] reductase id=1279050 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=BJP_08E140C01_Burkholderiales_65_30
RTP_02272018_0_2um_scaffold_1523_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5091..5993
DNA (903bp) protein (301aa)
hypothetical protein id=5081525 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
putative Permease of the drug/metabolite transporter (DMT) superfamily
Tax=GWE1_Burkholderiales_65_30_curated
RTP_02272018_0_2um_scaffold_1523_8
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5990..6760
DNA (771bp) protein (257aa)
Creatinine amidohydrolase {ECO:0000313|EMBL:CDS52833.1}; EC=3.5.2.10 {ECO:0000313|EMBL:CDS52833.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
crna3; Creatinine amidohydrolase (EC:3.5.2.10)
Creatinine amidohydrolase n=1 Tax=mine drainage metagenome RepID=E6PK36_9ZZZZ
RTP_02272018_0_2um_scaffold_1523_9

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6757..7446
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HP14_PSEST
Uncharacterized protein {ECO:0000313|EMBL:KKN70923.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cysteine hydrolase
RTP_02272018_0_2um_scaffold_1523_10

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7443..8225
DNA (783bp) protein (261aa)
Putative AHL-lactonase n=1 Tax=mine drainage metagenome RepID=E6PK34_9ZZZZ
Putative AHL-lactonase {ECO:0000313|EMBL:CBH95285.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative AHL-lactonase
RTP_02272018_0_2um_scaffold_1523_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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8235..10370
DNA (2136bp) protein (712aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein id=1355379 bin=GWE1_T_denit_62_9 species=Herbaspirillum seropedicae genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_1523_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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10367..11155
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003733210
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_1523_13
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11160..12965)
DNA (1806bp) protein (602aa)
allophanate hydrolase (EC:3.5.1.4)
Amidase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAH4_NITMU
Allophanate hydrolase {ECO:0000313|EMBL:GAO36910.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
RTP_02272018_0_2um_scaffold_1523_14
Calothrix sp. PCC 7507, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(12965..16423)
DNA (3459bp) protein (1153aa)
Urea carboxylase {ECO:0000313|EMBL:AFY34535.1}; EC=6.3.4.6 {ECO:0000313|EMBL:AFY34535.1};; TaxID=99598 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 7507.;"
Urea carboxylase n=1 Tax=Calothrix sp. PCC 7507 RepID=K9PMA1_9CYAN
urea carboxylase
RTP_02272018_0_2um_scaffold_1523_15
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16511..17149)
DNA (639bp) protein (213aa)
Urea carboxylase-associated protein 1 n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTL5_SIDLE
urea carboxylase-associated protein 1
Uncharacterized protein {ECO:0000313|EMBL:GAO32658.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
RTP_02272018_0_2um_scaffold_1523_16
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17160..17897)
DNA (738bp) protein (246aa)
Urea carboxylase-associated protein 2 n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SDQ8_GALCS
urea carboxylase-associated protein 2
Tax=GWA2_Gallionellales_54_124_curated
RTP_02272018_0_2um_scaffold_1523_17
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17932..18531)
DNA (600bp) protein (200aa)
ABC transporter related n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SDQ7_GALCS
Aliphatic sulfonates import ATP-binding protein SsuB {ECO:0000313|EMBL:GAO32660.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
ABC transporter
Displaying 17 items

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