ggKbase home page

RTP_07252018_0_1um_scaffold_17825

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_07252018_0_1um_scaffold_17825_1
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

69..1430
DNA (1362bp) protein (454aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKC7_NIAKG
ATPase AAA {ECO:0000313|EMBL:KIC90115.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
two component, sigma54 specific, transcriptional regulator, Fis family
RTP_07252018_0_1um_scaffold_17825_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1420..2169
DNA (750bp) protein (250aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003631403
integral membrane sensor signal transduction histidine kinase
RTP_07252018_0_1um_scaffold_17825_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2202..2696
DNA (495bp) protein (165aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKC8_NIAKG
integral membrane sensor signal transduction histidine kinase
RTP_07252018_0_1um_scaffold_17825_4
Owenweeksia hongkongensis, Owenweeksia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2835..3191
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R109_OWEHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV31680.1}; Flags: Precursor;; TaxID=926562 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Owenweeksia.;" source="Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL; B-23963).;"
RTP_07252018_0_1um_scaffold_17825_5
unknown

Not on your lists

comp(3277..3519)
DNA (243bp) protein (81aa)

This feature has no annotations

RTP_07252018_0_1um_scaffold_17825_6
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(3524..4090)
DNA (567bp) protein (189aa)
RNA polymerase, sigma-24 subunit, ECF subfamily id=2787234 bin=GWF2_Melioribacter_38_21 species=Mucilaginibacter paludis genus=Mucilaginibacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
ECF subfamily RNA polymerase sigma-24 subunit
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
RTP_07252018_0_1um_scaffold_17825_7
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4411..4995
DNA (585bp) protein (195aa)
Putative RNA methylase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XYF5_PEDHD
RNA methylase
Putative RNA methylase {ECO:0000313|EMBL:ACU02422.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
Displaying 7 items

View Taxonomy