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RTP_11222018_0_1um_scaffold_2769

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_2769_1
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(28..1272)
DNA (1245bp) protein (415aa)
FolC bifunctional protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B258_9PROT
Folylpolyglutamate synthase {ECO:0000313|EMBL:GAO36324.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
FolC bifunctional protein
RTP_11222018_0_1um_scaffold_2769_2
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1272..2141)
DNA (870bp) protein (290aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AFR0_9PROT
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
RTP_11222018_0_1um_scaffold_2769_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2238..2789)
DNA (552bp) protein (184aa)
tryptophan synthase subunit alpha (EC:4.2.1.20)
tryptophan synthase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI0003768D1B
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_2769_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2834..4033)
DNA (1200bp) protein (400aa)
tryptophan synthase subunit beta (EC:4.2.1.20)
tryptophan synthase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI0003649646
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_11222018_0_1um_scaffold_2769_5
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4020..4643)
DNA (624bp) protein (208aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AFQ6_9PROT
RTP_11222018_0_1um_scaffold_2769_6
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4653..5426)
DNA (774bp) protein (258aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
tRNA pseudouridine synthase A n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9U5_9PROT
RTP_11222018_0_1um_scaffold_2769_7
CG_Gallio_01, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5426..6067)
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SC75_GALCS
hypothetical protein
Tax=CG_Gallio_01
RTP_11222018_0_1um_scaffold_2769_8
Alcanivorax sp. DG881, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6067..6207)
DNA (141bp) protein (47aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI0003816D65
Putative uncharacterized protein {ECO:0000313|EMBL:EDX90237.1}; TaxID=236097 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. DG881.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_2769_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6161..8650)
DNA (2490bp) protein (830aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036A9257
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_2769_10
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8705..9709)
DNA (1005bp) protein (335aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SC73_GALCS
Tax=GWA2_Gallionellales_54_124_curated
RTP_11222018_0_1um_scaffold_2769_11
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9706..10818)
DNA (1113bp) protein (371aa)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QI52_METS6
asd; aspartate-semialdehyde dehydrogenase
Tax=BJP_S1_SUB10_Methylophilales_55_32
RTP_11222018_0_1um_scaffold_2769_12
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10836..11900)
DNA (1065bp) protein (355aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
3-isopropylmalate dehydrogenase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AFP9_9PROT
RTP_11222018_0_1um_scaffold_2769_13
BJP_08E140C01_10KDA_Methylophilales_47_88, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11917..12555)
DNA (639bp) protein (213aa)
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1BJ40_9NEIS
Tax=BJP_08E140C01_10KDA_Methylophilales_47_88
RTP_11222018_0_1um_scaffold_2769_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12552..13406)
DNA (855bp) protein (285aa)
isopropylmalate isomerase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] id=12497947 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
isopropylmalate isomerase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit {ECO:0000255|HAMAP-Rule:MF_01026}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01026};; Alpha-IPM isomerase {ECO:0000255|HAMAP-Rule:MF_01026}; Short=IPMI {ECO:0000255|HAMAP-Rule:MF_01026};; Isopropylmalate isomerase {ECO:0000255|HAMAP-Rule:MF_01026}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying 14 items

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