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RTP_11222018_0_1um_scaffold_324

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_324_1

Not on your lists

comp(143..3613)
DNA (3471bp) protein (1157aa)
DNA polymerase III, alpha subunit {ECO:0000313|EMBL:CBI10458.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBI10458.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA-directed DNA polymerase III, alpha subunit (EC:2.7.7.7)
DNA polymerase III, alpha subunit n=1 Tax=mine drainage metagenome RepID=E6QT86_9ZZZZ
RTP_11222018_0_1um_scaffold_324_2
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3671..4537
DNA (867bp) protein (289aa)
UPF0176 protein CFU_1040 n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AIT9_COLFT
Rhodanese domain protein UPF0176
UPF0176 protein LT85_1182 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
RTP_11222018_0_1um_scaffold_324_3
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4492..5025)
DNA (534bp) protein (178aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GDB2_NITSI
Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
RTP_11222018_0_1um_scaffold_324_4

Not on your lists

comp(5103..6995)
DNA (1893bp) protein (631aa)
K+ potassium transporter n=1 Tax=mine drainage metagenome RepID=E6QT88_9ZZZZ
K+ potassium transporter {ECO:0000313|EMBL:CBI10460.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
K+ transporter
RTP_11222018_0_1um_scaffold_324_5

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comp(7019..7582)
DNA (564bp) protein (188aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase) {ECO:0000313|EMBL:CBI10461.1}; EC=2.7.8.5 {ECO:0000313|EMBL:CBI10461.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase) n=1 Tax=mine drainage metagenome RepID=E6QT89_9ZZZZ
RTP_11222018_0_1um_scaffold_324_6
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7847..8359
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BTR6_9GAMM
conserved hypothetical protein
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO44021.1}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
RTP_11222018_0_1um_scaffold_324_7
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8541..9083)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Pseudomonas sp. S9 RepID=UPI000255705F
Putative uncharacterized protein {ECO:0000313|EMBL:EHL22435.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_324_8

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comp(9181..10980)
DNA (1800bp) protein (600aa)
UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) n=1 Tax=mine drainage metagenome RepID=E6QT91_9ZZZZ
UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) {ECO:0000313|EMBL:CBI10463.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
UvrABC system protein C
RTP_11222018_0_1um_scaffold_324_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10964..11605)
DNA (642bp) protein (214aa)
Putative uncharacterized protein id=1349958 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_324_10

Not on your lists

comp(11602..12684)
DNA (1083bp) protein (361aa)
Beta-hexosaminidase (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) {ECO:0000313|EMBL:CBI10465.1}; EC=3.2.1.52 {ECO:0000313|EMBL:CBI10465.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Beta-hexosaminidase (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) n=1 Tax=mine drainage metagenome RepID=E6QT93_9ZZZZ
glycoside hydrolase family 3 domain protein
RTP_11222018_0_1um_scaffold_324_11
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12681..13061)
DNA (381bp) protein (127aa)
Holo-[acyl-carrier-protein] synthase n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z2A0_9NEIS
holo-acyl-carrier-protein synthase
Tax=GWA2_Gallionellales_54_124_curated
RTP_11222018_0_1um_scaffold_324_12
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13058..13918)
DNA (861bp) protein (287aa)
radical SAM protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DF380
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_324_13
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14025..14741)
DNA (717bp) protein (239aa)
RNA ligase domain, REL/Rln2 n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZHD9_9PROT
RNA ligase domain, REL/Rln2
Tax=BJP_IG2103_Dechloromonas_60_92
RTP_11222018_0_1um_scaffold_324_14
Dickeya dadantii, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14745..15281)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00035F7F73
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS87448.1}; TaxID=579405 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya dadantii (strain Ech703).;"
RTP_11222018_0_1um_scaffold_324_15
GWC1_Azotobacter_66_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15278..16669)
DNA (1392bp) protein (464aa)
Putative uncharacterized protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida 01-B526 RepID=G7D147_AERSA
Hypothetical protein
Tax=GWC1_Azotobacter_66_9_curated
RTP_11222018_0_1um_scaffold_324_16

Not on your lists

comp(16798..17049)
DNA (252bp) protein (84aa)
Putative DNA methylase N-4/N-6 {ECO:0000313|EMBL:CBI04039.1}; EC=2.1.1.113 {ECO:0000313|EMBL:CBI04039.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative DNA methylase N-4/N-6 n=1 Tax=mine drainage metagenome RepID=E6QA13_9ZZZZ
adenine specific DNA methylase Mod
RTP_11222018_0_1um_scaffold_324_17

Not on your lists

comp(17214..17432)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=uncultured bacterium A1Q1_fos_550 RepID=L7VWT4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGC71518.1}; TaxID=1256583 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_550.;"
RTP_11222018_0_1um_scaffold_324_18
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17980..18882
DNA (903bp) protein (301aa)
Chaperone protein DnaJ n=1 Tax=Thermincola potens (strain JR) RepID=D5XDE4_THEPJ
chaperone DnaJ domain-containing protein
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
RTP_11222018_0_1um_scaffold_324_trna_4
unknown

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comp(19362..19446)
DNA (85bp)
transferRNA Ser
RTP_11222018_0_1um_scaffold_324_19
unknown

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19685..21175
DNA (1491bp) protein (497aa)
Putative uncharacterized protein id=1368443 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RTP_11222018_0_1um_scaffold_324_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21142..21681)
DNA (540bp) protein (180aa)
hypothetical protein
Putative uncharacterized protein id=1372250 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_324_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21678..22616)
DNA (939bp) protein (313aa)
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B {ECO:0000255|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000255|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000255|HAMAP-Rule:MF_01080}; Short=Psi55 synthase {ECO:0000255|HAMAP-Rule:MF_01080};; tRNA pseudouridylate synthase {ECO:0000255|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000255|HAMAP-Rule:MF_01080}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
tRNA pseudouridine synthase B n=1 Tax=Thiobacillus thioparus RepID=UPI00037F3664
RTP_11222018_0_1um_scaffold_324_22
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22613..22990)
DNA (378bp) protein (126aa)
Ribosome-binding factor A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKU1_9PROT
ribosome-binding factor A
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
RTP_11222018_0_1um_scaffold_324_23
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22993..25785)
DNA (2793bp) protein (931aa)
Translation initiation factor IF-2 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AHB2_9PROT
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
infB; translation initiation factor 2
RTP_11222018_0_1um_scaffold_324_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25817..27289)
DNA (1473bp) protein (491aa)
Transcription termination protein NusA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIM5_9PROT
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
nusA; transcription elongation factor NusA
RTP_11222018_0_1um_scaffold_324_25
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27318..27746)
DNA (429bp) protein (143aa)
Ribosome maturation factor RimP n=1 Tax=Nitrosospira sp. APG3 RepID=M5DV34_9PROT
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_324_trna_3
unknown

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comp(27873..27958)
DNA (86bp)
transferRNA Leu
RTP_11222018_0_1um_scaffold_324_trna_2
unknown

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comp(27965..28035)
DNA (71bp)
transferRNA Cys
RTP_11222018_0_1um_scaffold_324_trna_1
unknown

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comp(28132..28204)
DNA (73bp)
transferRNA Gly
RTP_11222018_0_1um_scaffold_324_26
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(28263..29090)
DNA (828bp) protein (276aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRB1_SIDLE
SAM-dependent methyltransferase {ECO:0000313|EMBL:KIF81507.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein
Displaying items 1-30 of 73 in total

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