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RTP_11222018_0_1um_scaffold_552

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_552_1
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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182..451
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037DAD17
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000255|HAMAP-Rule:MF_01343}; TaxID=557598 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
RTP_11222018_0_1um_scaffold_552_2
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

560..2683
DNA (2124bp) protein (708aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase {ECO:0000255|HAMAP-Rule:MF_01595};; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=PNP_METFK
polynucleotide phosphorylase/polyadenylase
RTP_11222018_0_1um_scaffold_552_3
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2862..3284)
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKX6_THIDA
hypothetical protein
Tax=CG_Hydro_01
RTP_11222018_0_1um_scaffold_552_4
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3304..3723)
DNA (420bp) protein (140aa)
RNA polymerase-binding transcription factor DksA n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GXD1_METFK
dksA; TraR/DksA family transcriptional regulator
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
RTP_11222018_0_1um_scaffold_552_5
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3813..4571
DNA (759bp) protein (253aa)
HAD family hydrolase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ALG2_9PROT
HAD family hydrolase
HAD family hydrolase {ECO:0000313|EMBL:BAN35529.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_552_6
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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4689..5087
DNA (399bp) protein (133aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
methionine sulfoxide reductase B n=1 Tax=Thioalkalivibrio sp. AKL10 RepID=UPI00036297C8
peptide methionine sulfoxide reductase msrb
RTP_11222018_0_1um_scaffold_552_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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5099..5794
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037376AF
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_11222018_0_1um_scaffold_552_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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5862..6824
DNA (963bp) protein (321aa)
Putative hydrolase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJU3_THIDA
hydrolase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_552_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6817..7125)
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJU4_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97055.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_552_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7133..8509)
DNA (1377bp) protein (459aa)
DEAD/DEAH box helicase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJU5_THIDA
DEAD/DEAH box helicase
DEAD/DEAH box helicase {ECO:0000313|EMBL:AAZ97054.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_552_11
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8701..10086
DNA (1386bp) protein (462aa)
outer membrane efflux protein id=12496504 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria
outer membrane efflux protein
Tax=CG_Beta_01
RTP_11222018_0_1um_scaffold_552_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10103..11194
DNA (1092bp) protein (364aa)
putative Secretion protein HlyD id=12493230 bin=THIO_HI species=Thiomonas arsenitoxydans genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative Secretion protein HlyD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_552_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11187..14468
DNA (3282bp) protein (1094aa)
acriflavin resistance protein id=12496502 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative Multidrug efflux transporter AcrB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_552_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14500..14718
DNA (219bp) protein (73aa)
hypothetical protein id=12496501 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_552_15
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14728..15141
DNA (414bp) protein (138aa)
Rhodanese domain protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CNE2_SIDLE
rhodanese-like protein
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
RTP_11222018_0_1um_scaffold_552_16
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15190..15396
DNA (207bp) protein (69aa)
Glutaredoxin, GrxC family n=1 Tax=Herbaspirillum sp. CF444 RepID=J2M9T0_9BURK
Glutaredoxin, GrxC family {ECO:0000313|EMBL:EJL94508.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
glutaredoxin GrxC
RTP_11222018_0_1um_scaffold_552_17

Not on your lists

15468..15893
DNA (426bp) protein (142aa)
Thioredoxin C-3 n=1 Tax=mine drainage metagenome RepID=E6QUI3_9ZZZZ
Thioredoxin C-3 {ECO:0000313|EMBL:CBI10906.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
thioredoxin
RTP_11222018_0_1um_scaffold_552_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15944..16477)
DNA (534bp) protein (178aa)
hypothetical protein id=12495265 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_552_19
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16560..19235
DNA (2676bp) protein (892aa)
Aconitate hydratase (Citrate hydro-lyase) (Aconitase) n=1 Tax=mine drainage metagenome RepID=E6QRI9_9ZZZZ
aconitate hydratase 1
Tax=RBG_16_Gamma2_60_9_curated
RTP_11222018_0_1um_scaffold_552_20
CSP1_5_NC10, NC10, Bacteria

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19238..19609
DNA (372bp) protein (124aa)
hypothetical protein; K00389 putative membrane protein id=14429984 bin=bin3_NC10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
RTP_11222018_0_1um_scaffold_552_21

Not on your lists


19630..21645
DNA (2016bp) protein (672aa)
Methionyl-tRNA synthetase {ECO:0000313|EMBL:CBI09863.1}; EC=6.1.1.10 {ECO:0000313|EMBL:CBI09863.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Methionyl-tRNA synthetase n=1 Tax=mine drainage metagenome RepID=E6QRJ1_9ZZZZ
RTP_11222018_0_1um_scaffold_552_22

Not on your lists

21646..22536
DNA (891bp) protein (297aa)
Putative Patatin n=1 Tax=mine drainage metagenome RepID=E6QVA8_9ZZZZ
Putative Patatin {ECO:0000313|EMBL:CBI11181.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
patatin
RTP_11222018_0_1um_scaffold_552_23

Not on your lists

22533..23231
DNA (699bp) protein (233aa)
6-phosphogluconolactonase n=1 Tax=mine drainage metagenome RepID=E6QQZ0_9ZZZZ
6-phosphogluconolactonase {ECO:0000313|EMBL:CBI09661.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
6-phosphogluconolactonase
RTP_11222018_0_1um_scaffold_552_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23228..24382
DNA (1155bp) protein (385aa)
hypothetical protein id=12497414 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 24 items

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