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RTP_11222018_0_1um_scaffold_672

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_672_1
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..185
DNA (183bp) protein (61aa)
Integrase, catalytic region n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122F4_POLSJ
integrase catalytic subunit
Integrase, catalytic region {ECO:0000313|EMBL:ABE46588.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
RTP_11222018_0_1um_scaffold_672_2
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(526..843)
DNA (318bp) protein (106aa)
plasmid stabilization protein n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI00023764DD
Plasmid stabilization system protein {ECO:0000313|EMBL:EXI86898.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
plasmid stabilization system protein
RTP_11222018_0_1um_scaffold_672_3
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(840..1109)
DNA (270bp) protein (90aa)
Toxin-antitoxin system protein n=6 Tax=Bacteria RepID=H7EGH3_SALHO
CopG/Arc/MetJ family transcriptional regulator
KluA protein {ECO:0000313|EMBL:AJM90452.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
RTP_11222018_0_1um_scaffold_672_4
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1520..2020)
DNA (501bp) protein (167aa)
Hemerythrin HHE cation binding domain protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IZX0_9GAMM
Hemerythrin HHE cation binding domain protein {ECO:0000313|EMBL:EGW20492.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_672_5
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2545..3168)
DNA (624bp) protein (208aa)
Transglutaminase domain-containing protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SG86_GALCS
transglutaminase domain-containing protein
Tax=GWA2_Gallionellales_59_43_curated
RTP_11222018_0_1um_scaffold_672_6
unknown

Not on your lists

3303..3455
DNA (153bp) protein (51aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_672_7
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3612..4301)
DNA (690bp) protein (230aa)
Glutathione S-transferase domain protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T869_9GAMM
Glutathione S-transferase {ECO:0000313|EMBL:KHD32504.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
putative glutathione S-transferase
RTP_11222018_0_1um_scaffold_672_8
unknown

Not on your lists

comp(4320..4748)
DNA (429bp) protein (143aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_672_9
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4714..5073)
DNA (360bp) protein (120aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DL34_PSEMN
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_11222018_0_1um_scaffold_672_10
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5108..5668)
DNA (561bp) protein (187aa)
Redoxin n=1 Tax=Thauera sp. 27 RepID=N6XPJ6_9RHOO
Redoxin superfamily {ECO:0000313|EMBL:CDH43938.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Peroxiredoxin
RTP_11222018_0_1um_scaffold_672_11
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5756..6610)
DNA (855bp) protein (285aa)
Putative uncharacterized protein n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2J3Z8_PSEUL
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK76793.1}; TaxID=748280 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania sp. (strain NH8B).;"
RTP_11222018_0_1um_scaffold_672_12
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

7185..8507
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QIK9_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGY57500.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
RTP_11222018_0_1um_scaffold_672_13
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8602..8850)
DNA (249bp) protein (83aa)
hypothetical protein id=12553304 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
RTP_11222018_0_1um_scaffold_672_14
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(8889..9128)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WFK9_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ19008.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
RTP_11222018_0_1um_scaffold_672_15
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9179..9580)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium BDW918 RepID=I2JQ27_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIF45079.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_672_16
unknown

Not on your lists

comp(9974..10633)
DNA (660bp) protein (220aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_672_17
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10808..11290)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DL45_BRAJP
putative signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:CDG85577.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
RTP_11222018_0_1um_scaffold_672_18
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11449..11826)
DNA (378bp) protein (126aa)
lactoylglutathione lyase n=1 Tax=Methylomicrobium buryatense RepID=UPI00034BAACB
Glyoxalase/bleomycin resistance protein/dioxygenase
Uncharacterized protein {ECO:0000313|EMBL:EUJ10747.1}; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
RTP_11222018_0_1um_scaffold_672_19
unknown

Not on your lists

comp(12031..12270)
DNA (240bp) protein (80aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_672_20
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12309..12845
DNA (537bp) protein (179aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SEQ5_GALCS
transposase IS116/IS110/IS902 family protein
Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
RTP_11222018_0_1um_scaffold_672_21
unknown

Not on your lists

comp(13106..13276)
DNA (171bp) protein (57aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_672_22
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13355..13555)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5C7R2_9GAMM
hypothetical protein
Tax=GWA2_Gallionellales_55_18_curated
RTP_11222018_0_1um_scaffold_672_23
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13794..14753)
DNA (960bp) protein (320aa)
Transposase IS4 family n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82VJ0_NITEU
IS4 family transposase
Transposase IS4 family {ECO:0000313|EMBL:CAD85004.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
RTP_11222018_0_1um_scaffold_672_24
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14747..15307)
DNA (561bp) protein (187aa)
Transposase IS4 family n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82VJ0_NITEU
IS4 family transposase
Transposase IS4 family {ECO:0000313|EMBL:CAD85004.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
RTP_11222018_0_1um_scaffold_672_25
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15516..16595)
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XBY4_RHIFR
Uncharacterized protein {ECO:0000313|EMBL:EXI81265.1}; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_672_26
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16837..17820
DNA (984bp) protein (328aa)
Integron integrase Phage integrase Phage integrase N-terminal SAM-like domain n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q820I6_NITEU
intINeu; integron integrase
Integron integrase Phage integrase Phage integrase N-terminal SAM-like domain {ECO:0000313|EMBL:CAD86100.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
RTP_11222018_0_1um_scaffold_672_27
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17967..18944)
DNA (978bp) protein (326aa)
Putative uncharacterized protein n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZG74_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ27105.1}; TaxID=153948 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
RTP_11222018_0_1um_scaffold_672_28
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19141..20103
DNA (963bp) protein (321aa)
Transcriptional regulator, LysR family n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JL99_9GAMM
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEM49214.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
RTP_11222018_0_1um_scaffold_672_29
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20374..20487
DNA (114bp) protein (38aa)
Peptide chain release factor 3 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AMS4_9PROT
prfC; peptide chain release factor 3
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
Displaying 29 items

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